Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G16720 851 / 0 HCF173 high chlorophyll fluorescence phenotype 173 (.1) AT4G18810 105 / 1e-23 NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) AT4G31530 59 / 4e-09 NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) AT2G37660 55 / 7e-08 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT5G02240 54 / 7e-08 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT1G72640 45 / 0.0001 NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10033322 [exp] 1100 / 0 AT1G16720 874 / 0.0 high chlorophyll fluorescence phenotype 173 (.1) Lus10029255 [exp] 119 / 5e-28 AT4G18810 851 / 0.0 NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Lus10007308 [exp] 115 / 6e-27 AT4G18810 850 / 0.0 NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Lus10022420 [exp] 57 / 2e-08 AT4G31530 415 / 4e-146 NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Lus10024383 [exp] 55 / 6e-08 AT2G37660 458 / 1e-163 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10010846 [exp] 55 / 1e-07 AT2G37660 451 / 2e-160 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10009715 [exp] 54 / 1e-07 AT4G31530 408 / 1e-144 NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Lus10003328 [exp] 45 / 0.0002 AT4G35250 653 / 0.0 NAD(P)-binding Rossmann-fold superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G000400 [exp] 884 / 0 AT1G16720 863 / 0.0 high chlorophyll fluorescence phenotype 173 (.1) Potri.007G003500 [exp] 869 / 0 AT1G16720 852 / 0.0 high chlorophyll fluorescence phenotype 173 (.1) Potri.004G061200 [exp] 110 / 4e-25 AT4G18810 812 / 0.0 NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Potri.006G086800 [exp] 56 / 4e-08 AT2G37660 450 / 2e-160 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.001G253900 [exp] 50 / 2e-06 AT4G31530 399 / 1e-139 NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Potri.003G063800 [exp] 48 / 1e-05 AT1G72640 348 / 1e-120 NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Potri.009G143000 [exp] 44 / 0.0002 AT4G35250 642 / 0.0 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.011G079600 [exp] 43 / 0.0004 AT2G34460 370 / 6e-130 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.005G229500 [exp] 43 / 0.0004 AT5G42800 522 / 0.0 dihydroflavonol 4-reductase (.1) Potri.003G138400 [exp] 42 / 0.0007 AT5G42800 202 / 9e-62 dihydroflavonol 4-reductase (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF05368 [flax] [poplar] NmrA NmrA-like family CL0202 [flax] [poplar] GBD PF08547 [flax] [poplar] CIA30 Complex I intermediate-associated protein 30 (CIA30)
Representative CDS sequence Show only first row Show all	>Lus10034781 pacid=23142284 polypeptide=Lus10034781 locus=Lus10034781.g ID=Lus10034781.BGIv1.0 annot-version=v1.0 ATGAAAGCCACCGCAATTCTTCCAACCACCCCCAGTCTTCGAGTCGGAATCGCAAATGCCAATGGCTTCATCAACTACCGCCGACCTTTCACTTTTCCTC CCGCCGTCAAGAAGTCCACTCCTCTCACCGTCGTCGCCATGTCTTCCTCCGACGACGACAGTAAAACCACCAGCAACAAGAAGAATAAGAAGAGCGCTAA AGCCGACGACGACGAATCATTGCCCCCTACCACCATCACCGCTGCCTCCAGTGATCCGTCCAAGGAGTCGCAGCCTATCAACCTGGATGACGTCAACCCG GTGGGGCTAGGCCGTAGATCGCGGCAGATATTCGACGAGGTGTGGCGGAAGTTCTCTGGACTAGGTCAGATTTCCCGGACCACCCGACCCGACGAGACTG CTGCAGCGTTGGACGCTCTGCTCATCAGAGAAGGTCCGATGTGCGAGTTCGCCGTTCCAGGTGCGCAGAACACCACCGTCCTCGTCGTCGGGCCTACTAG CCGAATTGGCCGCATTCTTGTCAGAAAACTCATGCTCCGTGGCTACTCCGTCAAGGCTTTGTTAAGGAAGGTAGACCAAGAAGTGGTGGAAATGCTGCCA AGGTCAGTGGAAATAGTGACAGGGGATGGAGGGGGTTTTTCTACAATTCAGGAAGCAGTACAAGGCTGCAACAAGATCATCTACTGTGCAACAGCTCGTT CCACCATTACTGCTGATCTCTTCCGGGTAGATCAGCAAGGGGTTTATAATCTCACCAAAGCCTTTCAGGATTACAATCACAGGCAAGCACAACTGCGGGC TGGGAAAAGCAGTAAGAGCAAGCTTCTGCTGGCAAAGTTCAGGTCTGCTGAGTCATTGAATGGCTGGGAAGTCCAGTTGGGAACTTACTTCAAGGATGCT GCTGCTTCCAAGTATGATGGTGGATTGGATGCATCATTTGAGTACAATGAGAACGGCGAGGCAGTTTTCTCAGGGTATGTTTACACTAGAGGAGGATATG TTGATTTGTCGAGAAAGCTTTCACTTCCTTTAGGGTACACGCTCGACAGGTATGAAGGGCTTGTGCTATCTGTTGGTGGTAATGGAAGATCATATGTTCT TATTCTTGAAGCCGGTCCTTCAGCTGATAGAACCCAAAGCAAATTATACTTTGCAAGATTCAACACAAAAGCAGGGTTCTGTAGGGTTAGGGTGCCATTT TCATCTTTCCGTTCTGTGAAACCAGATGATCCTCCACTAGATCCATTCCTTGTACACACAATGACCATTCGATTTGAGCCCCGAAGACAGAGATCTATTG AAGCTCTTTCAGGACCTCAGCAAGATCCAAGGAGTTTTAAATTGATATTCGAATACATAAAAGCTCTGCCGACTGGACAAGAGACAGATTTTGTATTAGT GTCATGTACAGGGCAAGGAGTAGAACCTACCAGGAGGGAACAAGTCCTGAAGGCGAAAAGGGCTGGTGAAGATTTATTAAGGAATTCAGGACTTGGATAC ACAATCATTCGTCCTGGACCTCTCAAGGAAGAGCCTGGTGGGCAACGTGCACTGGTTTTTGATCAAGGTAACAGGATTTCTCAGGGCATAAGCTGTGCCG ATGTAGCTGATATATGCGTGAAGGCTTTGCATGATTCAACTGCTAGAAACAAAAGCTTTGACGTCTGTTACGAGTACGTGGCTGAGCAAGGACAAGAGCT TTACGAGCTGGTGGCACATCTACCGGACAAAGCAAACAACTACCTAACTCCTGCACTCTCTGTGCTTGAGAAGAACACATGA
AA sequence Show only first row Show all	>Lus10034781 pacid=23142284 polypeptide=Lus10034781 locus=Lus10034781.g ID=Lus10034781.BGIv1.0 annot-version=v1.0 MKATAILPTTPSLRVGIANANGFINYRRPFTFPPAVKKSTPLTVVAMSSSDDDSKTTSNKKNKKSAKADDDESLPPTTITAASSDPSKESQPINLDDVNP VGLGRRSRQIFDEVWRKFSGLGQISRTTRPDETAAALDALLIREGPMCEFAVPGAQNTTVLVVGPTSRIGRILVRKLMLRGYSVKALLRKVDQEVVEMLP RSVEIVTGDGGGFSTIQEAVQGCNKIIYCATARSTITADLFRVDQQGVYNLTKAFQDYNHRQAQLRAGKSSKSKLLLAKFRSAESLNGWEVQLGTYFKDA AASKYDGGLDASFEYNENGEAVFSGYVYTRGGYVDLSRKLSLPLGYTLDRYEGLVLSVGGNGRSYVLILEAGPSADRTQSKLYFARFNTKAGFCRVRVPF SSFRSVKPDDPPLDPFLVHTMTIRFEPRRQRSIEALSGPQQDPRSFKLIFEYIKALPTGQETDFVLVSCTGQGVEPTRREQVLKAKRAGEDLLRNSGLGY TIIRPGPLKEEPGGQRALVFDQGNRISQGISCADVADICVKALHDSTARNKSFDVCYEYVAEQGQELYELVAHLPDKANNYLTPALSVLEKNT

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G16720		HCF173	high chlorophyll fluorescence ...		Lus10034781 [exp]	0	1
AT1G16720		HCF173	high chlorophyll fluorescence ...		Lus10033322 [exp]	1.0	0.9672
AT5G13630		ABAR, CHLH, CCH...	ABA-BINDING PROTEIN, magnesium...		Lus10018069 [exp]	6.5	0.8847
AT5G01920		STN8	State transition 8, Protein ki...		Lus10022730 [exp]	7.9	0.9121
AT5G01920		STN8	State transition 8, Protein ki...		Lus10014183 [exp]	8.5	0.9015
AT3G22840		ELIP1	EARLY LIGHT-INDUCABLE PROTEIN,...		Lus10006620 [exp]	9.5	0.8834
AT3G63520		ATNCED1, ATCCD1...	carotenoid cleavage dioxygenas...		Lus10029512 [exp]	10.0	0.8823
AT3G56140			Protein of unknown function (D...		Lus10010224 [exp]	11.6	0.8742
AT2G32950		FUS1, EMB168, D...	FUSCA 1, EMBRYO DEFECTIVE 168,...		Lus10029990 [exp]	11.7	0.8553
AT3G21670			Major facilitator superfamily ...		Lus10030006 [exp]	13.0	0.8728
AT1G67840		CSK	chloroplast sensor kinase (.1....		Lus10011413 [exp]	14.3	0.8779

Compare expression of checked genes

Lus10034781 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.