Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G78995 143 / 3e-44 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10033323 [exp] 223 / 6e-75 AT1G78995 148 / 9e-46 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G003600 [exp] 135 / 1e-40 AT1G78995 146 / 4e-45 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10034782 pacid=23142185 polypeptide=Lus10034782 locus=Lus10034782.g ID=Lus10034782.BGIv1.0 annot-version=v1.0 ATGACCACCGCAATCAACTGCCGCAGTGCTAGGAGCAGCAGCAGTACATCTGAAATTAGCCGACGCCTGGTACTAAGGATTGCAGTAAGCCAGCTGGTAG CTGCCTGCGCGGTGCTATTCATGTCCCCGGAAGCGGCCGGCGGCGCAATAGAGGGAAAGAGAGGTAAGGGAGCGGCGAAAGGAGGCGATGAGGAGGAGGA GGAGGAGGAGACGCTTGGGAATGTGCCGCAGACGCTGGCGGGAGAATGCGGAGAGGAAGAAGGGAAGGATTGTAACAAGAAGAAGATGAGAATACAGAGA CCTAAATCCAGAAAAGCTGAGGTTTGCACTGTGAAATGCGTCAACACCTGCATCCGCGGCGATGAAGGCGAAGGCCCTTTCAATATCAGGAGACCTCTGG TGGTGTTCAAGCAAGGATTCCGTAGCCGCCACTACTGCTTAGTAGAGTGCTCTGACATCTGTAATCTGATCGGAGATGGAGACGATGGCCCCTGA
AA sequence Show only first row Show all	>Lus10034782 pacid=23142185 polypeptide=Lus10034782 locus=Lus10034782.g ID=Lus10034782.BGIv1.0 annot-version=v1.0 MTTAINCRSARSSSSTSEISRRLVLRIAVSQLVAACAVLFMSPEAAGGAIEGKRGKGAAKGGDEEEEEEETLGNVPQTLAGECGEEEGKDCNKKKMRIQR PKSRKAEVCTVKCVNTCIRGDEGEGPFNIRRPLVVFKQGFRSRHYCLVECSDICNLIGDGDDGP

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G78995			unknown protein		Lus10034782 [exp]	0	1
AT1G55480		ZKT	protein containing PDZ domain,...		Lus10013403 [exp]	3.0	0.9335
AT1G55480		ZKT	protein containing PDZ domain,...		Lus10010322 [exp]	8.9	0.9236
AT5G07020			proline-rich family protein (....		Lus10024125 [exp]	12.6	0.9078
AT5G38410			Ribulose bisphosphate carboxyl...		Lus10017597 [exp]	15.5	0.9061
AT3G25805			unknown protein		Lus10016741 [exp]	17.3	0.8923
AT5G38410			Ribulose bisphosphate carboxyl...		Lus10033558 [exp]	18.2	0.9003
AT4G39970			Haloacid dehalogenase-like hyd...		Lus10000633 [exp]	19.3	0.9001
AT1G53670		MSRB1, ATMSRB1	methionine sulfoxide reductase...		Lus10013727 [exp]	22.5	0.8946
AT4G32590			2Fe-2S ferredoxin-like superfa...		Lus10041038 [exp]	23.0	0.8957
AT5G01920		STN8	State transition 8, Protein ki...		Lus10022730 [exp]	24.5	0.8955

Compare expression of checked genes

Lus10034782 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.