Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G57170 116 / 4e-34 Tautomerase/MIF superfamily protein (.1.2) AT5G01650 92 / 1e-24 Tautomerase/MIF superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10033324 [exp] 133 / 2e-40 AT5G57170 119 / 1e-35 Tautomerase/MIF superfamily protein (.1.2) Lus10022681 [exp] 86 / 8e-22 AT5G01650 172 / 8e-57 Tautomerase/MIF superfamily protein (.1.2) Lus10014233 [exp] 81 / 3e-20 AT5G01650 169 / 1e-55 Tautomerase/MIF superfamily protein (.1.2) Lus10012223 [exp] 67 / 6e-15 AT5G01650 146 / 9e-47 Tautomerase/MIF superfamily protein (.1.2) Lus10000344 [exp] 62 / 3e-13 AT3G51660 96 / 2e-27 Tautomerase/MIF superfamily protein (.1) Lus10012222 [exp] 62 / 6e-13 AT3G51660 158 / 1e-51 Tautomerase/MIF superfamily protein (.1) Lus10000345 [exp] 44 / 9e-06 AT5G01650 52 / 2e-11 Tautomerase/MIF superfamily protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G075100 [exp] 110 / 1e-31 AT5G57170 194 / 7e-66 Tautomerase/MIF superfamily protein (.1.2) Potri.006G104500 [exp] 93 / 5e-25 AT5G01650 200 / 5e-68 Tautomerase/MIF superfamily protein (.1.2) Potri.016G126500 [exp] 93 / 7e-25 AT5G01650 193 / 2e-65 Tautomerase/MIF superfamily protein (.1.2) Potri.016G126800 [exp] 92 / 1e-24 AT5G01650 185 / 4e-62 Tautomerase/MIF superfamily protein (.1.2) Potri.006G104600 [exp] 92 / 2e-24 AT5G01650 180 / 3e-60 Tautomerase/MIF superfamily protein (.1.2) Potri.016G126600 [exp] 92 / 2e-24 AT5G01650 216 / 2e-74 Tautomerase/MIF superfamily protein (.1.2) Potri.016G126700 [exp] 87 / 1e-22 AT5G01650 164 / 6e-54 Tautomerase/MIF superfamily protein (.1.2) Potri.006G104800 [exp] 60 / 5e-12 AT3G51660 151 / 7e-49 Tautomerase/MIF superfamily protein (.1) Potri.016G127300 [exp] 59 / 1e-11 AT3G51660 151 / 7e-49 Tautomerase/MIF superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0082 [flax] [poplar] MIF PF01187 [flax] [poplar] MIF Macrophage migration inhibitory factor (MIF)
Representative CDS sequence Show only first row Show all	>Lus10034783 pacid=23142279 polypeptide=Lus10034783 locus=Lus10034783.g ID=Lus10034783.BGIv1.0 annot-version=v1.0 ATGGCTCCGCCAATGGATGGGCCCATGCCCAGTAGACTCTACGAGCCATCACTTGGCTCAAGCGTCAGGGAGCTAGTCCCAAGGTATGTGATGATAGTGG TGAACAGCGGGGTACCTATGGCGTTTGCTGGTACGGAGGAGCCTGCTGCATTTGGAGAATTGATTTCGATAGGGGGACTGGGCCCAAGTGTTAACGGGAA ACTTAGTTCTACCATTGCTGACATTCTTCAAACAAAGGCCTCCATCGACAGCTCCCGATTTTACATAAAGTTTTACGATGTTGAGGGCAGACATCAAGAC ATGTGGAAATGCAGTGGAAGGAATTTAGGAAAGAAGCGTGCGTGTCATAAGCAGCTTCGTTGGATCTTACGTAGACATTGCCAACTGTCTCCAAATTGTT TGCCTCTTCCGGCGGCTATATGCTATATATTAGAATCAACAGTAGAGTTGCAACCTCGCTCTCTCAAGCAACTCATCATCCACATAACTGGGTGA
AA sequence Show only first row Show all	>Lus10034783 pacid=23142279 polypeptide=Lus10034783 locus=Lus10034783.g ID=Lus10034783.BGIv1.0 annot-version=v1.0 MAPPMDGPMPSRLYEPSLGSSVRELVPRYVMIVVNSGVPMAFAGTEEPAAFGELISIGGLGPSVNGKLSSTIADILQTKASIDSSRFYIKFYDVEGRHQD MWKCSGRNLGKKRACHKQLRWILRRHCQLSPNCLPLPAAICYILESTVELQPRSLKQLIIHITG

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G57170			Tautomerase/MIF superfamily pr...		Lus10034783 [exp]	0	1
AT3G47860		CHL	chloroplastic lipocalin (.1)		Lus10037318 [exp]	2.8	0.8758
AT4G24470	GATA	GATA25, TIFY1, ...	Zinc-finger protein expressed ...		Lus10042865 [exp]	3.0	0.8617
					Lus10016908 [exp]	3.7	0.8469
AT3G19800			Protein of unknown function (D...		Lus10040969 [exp]	6.1	0.8865
AT5G26670			Pectinacetylesterase family pr...		Lus10000253 [exp]	6.3	0.8614
AT5G51410			LUC7 N_terminus domain-contain...		Lus10027212 [exp]	8.0	0.8048
AT5G04900		NOL	NYC1-like (.1)		Lus10034874 [exp]	13.6	0.8398
AT5G35790		G6PD1	glucose-6-phosphate dehydrogen...		Lus10012339 [exp]	21.6	0.8257
AT3G47490			HNH endonuclease (.1.2.3)		Lus10034462 [exp]	22.0	0.8088
AT2G21370		XK1, XK-1	XYLULOSE KINASE 1, xylulose ki...		Lus10017967 [exp]	22.3	0.8495

Compare expression of checked genes

Lus10034783 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.