Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G68760 174 / 1e-56 ATNUDX1, ATNUDT1 NUDIX HYDROLASE 1, ARABIDOPSIS THALIANA NUDIX HYDROLASE HOMOLOG 1, nudix hydrolase 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10033325 [exp] 244 / 1e-84 AT1G68760 201 / 1e-67 NUDIX HYDROLASE 1, ARABIDOPSIS THALIANA NUDIX HYDROLASE HOMOLOG 1, nudix hydrolase 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G114300 [exp] 189 / 7e-63 AT1G68760 196 / 1e-65 NUDIX HYDROLASE 1, ARABIDOPSIS THALIANA NUDIX HYDROLASE HOMOLOG 1, nudix hydrolase 1 (.1) Potri.008G114400 [exp] 141 / 5e-43 AT1G68760 177 / 1e-56 NUDIX HYDROLASE 1, ARABIDOPSIS THALIANA NUDIX HYDROLASE HOMOLOG 1, nudix hydrolase 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0261 [flax] [poplar] NUDIX PF00293 [flax] [poplar] NUDIX NUDIX domain
Representative CDS sequence Show only first row Show all	>Lus10034784 pacid=23142166 polypeptide=Lus10034784 locus=Lus10034784.g ID=Lus10034784.BGIv1.0 annot-version=v1.0 ATGGAGCCGCCGACGCCGTCTCCCAAAGTTGCCGTGGTACTATTCCTGCTTAAAGGCACGTCATCTGTTCTGCTGGGACGTCGCCGGTCGTCAATCGGAG ATTCCACCTTTGCTCTCCCCGGCGGAAACCTCGAATTTGGAGAAAGCTTTGAAGAGTGCGCGATAAGAGAACTGAAGGAAGAGACGGGGCTGACGGTTCT CGAGACAGAGTTCCTAACGGTGACGAACAACGTGTTTGTAGAATCACCCAAACCCTCGCACTACGTCACCGTATTCCTCCGGGCGAAGCTGCAAGACGAT CAAGTTCCTCAAAATATGGAGCCTGAGAAGTGCTACGGTTGGGATTGGTACAATTGGGAAGACCTCCCTTCGCCGCTCTTCTGGCCGCTGGAGAAGATGG TGAAAAGTGGATTAAATCCTTTTGCTTAA
AA sequence Show only first row Show all	>Lus10034784 pacid=23142166 polypeptide=Lus10034784 locus=Lus10034784.g ID=Lus10034784.BGIv1.0 annot-version=v1.0 MEPPTPSPKVAVVLFLLKGTSSVLLGRRRSSIGDSTFALPGGNLEFGESFEECAIRELKEETGLTVLETEFLTVTNNVFVESPKPSHYVTVFLRAKLQDD QVPQNMEPEKCYGWDWYNWEDLPSPLFWPLEKMVKSGLNPFA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G68760		ATNUDX1, ATNUDT...	NUDIX HYDROLASE 1, ARABIDOPSIS...		Lus10034784 [exp]	0	1
AT5G49210			unknown protein		Lus10032604 [exp]	2.2	0.9160
AT1G68760		ATNUDX1, ATNUDT...	NUDIX HYDROLASE 1, ARABIDOPSIS...		Lus10033325 [exp]	3.9	0.9116
AT5G18260			RING/U-box superfamily protein...		Lus10020256 [exp]	5.0	0.8837
AT5G14140	C2H2ZnF		zinc ion binding;nucleic acid ...		Lus10032036 [exp]	5.7	0.8799
AT5G19910		MED31	SOH1 family protein (.1.2)		Lus10016131 [exp]	5.7	0.9068
AT1G11240			unknown protein		Lus10011247 [exp]	7.5	0.8984
AT2G34830	WRKY	ATWRKY35, WRKY3...	maternal effect embryo arrest ...		Lus10038426 [exp]	10.5	0.9127
AT2G06210		VIP6, ELF8	VERNALIZATION INDEPENDENCE 6, ...		Lus10000472 [exp]	13.5	0.8833
AT5G20570		HRT1, ROC1, RBX...	REGULATOR OF CULLINS-1, RING-b...		Lus10015667 [exp]	15.8	0.8957
AT2G03190		ASK16	SKP1-like 16 (.1)		Lus10031747 [exp]	16.6	0.8954

Compare expression of checked genes

Lus10034784 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.