Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G16740 211 / 2e-71 Ribosomal protein L20 (.1) ATCG00660 57 / 6e-11 ATCG00660.1, RPL20 ribosomal protein L20 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10033326 [exp] 256 / 4e-89 AT1G16740 206 / 3e-70 Ribosomal protein L20 (.1) Lus10006327 [exp] 253 / 1e-87 AT1G16740 213 / 1e-72 Ribosomal protein L20 (.1) Lus10029597 [exp] 250 / 2e-86 AT1G16740 213 / 7e-73 Ribosomal protein L20 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G119300 [exp] 225 / 9e-77 AT1G16740 235 / 1e-81 Ribosomal protein L20 (.1) Potri.004G095475 [exp] 96 / 4e-26 AT1G16740 107 / 4e-32 Ribosomal protein L20 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00453 [flax] [poplar] Ribosomal_L20 Ribosomal protein L20
Representative CDS sequence Show only first row Show all	>Lus10034785 pacid=23142261 polypeptide=Lus10034785 locus=Lus10034785.g ID=Lus10034785.BGIv1.0 annot-version=v1.0 ATGGCGAGTTCTCCAAACCCAACCCGCCCGACCGAATTCCAATCCAGAGAGGACCGGAAAGAACCGTCCTTTAAGGCTTTCACTCCACCCCGTCGAGTTG GCCGCCGTCTGCCGCTCGCTCCTACGACGGTTTCTGTACTAGCTTCTCTGGACACCGTCGGTGGTGAAAAAATGATGAACAAGAAGGAGATATTCAAGCT AGCAAAAGGGTTTAGGGGGAGAGCAAAAAATTGCATCAGGATAGCGAGAGAGAGGGTGGAGAAGGCGTTGCAGTATTCCTACAGGGACCGTAGGAACAAG AAGCGTGACATGCGCTCCTTATGGATTCAACGAATCAGTGCTGGCACCAGGCAACATCATGTTCATTATGGTCACTTCATGCATGGGCTTAAGAAGGAGA ACATCCAGCTGAACCGGAAAGTGTTGTCGGAGATATCTATGCACGAGCCGTACAGTTTCAAGGCACTGGTAGACATTTCTCGCACTGCTTTCCCAGGAAA CAAACACATCTTCCATCGACCCAGGAACGTGAACACGCCTATCAGTGCCTAG
AA sequence Show only first row Show all	>Lus10034785 pacid=23142261 polypeptide=Lus10034785 locus=Lus10034785.g ID=Lus10034785.BGIv1.0 annot-version=v1.0 MASSPNPTRPTEFQSREDRKEPSFKAFTPPRRVGRRLPLAPTTVSVLASLDTVGGEKMMNKKEIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNK KRDMRSLWIQRISAGTRQHHVHYGHFMHGLKKENIQLNRKVLSEISMHEPYSFKALVDISRTAFPGNKHIFHRPRNVNTPISA

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G16740			Ribosomal protein L20 (.1)		Lus10034785 [exp]	0	1
AT1G59970			Matrixin family protein (.1)		Lus10014512 [exp]	9.5	0.5820
AT3G18030		ATHAL3A	HALOTOLERANCE DETERMINANT 3, A...		Lus10014795 [exp]	10.8	0.5906
AT3G27530		MAG4, GC6	MAIGO 4, golgin candidate 6 (....		Lus10000216 [exp]	11.7	0.5695
AT5G09510			Ribosomal protein S19 family p...		Lus10041168 [exp]	15.9	0.6715
AT2G36930	C2H2ZnF		zinc finger (C2H2 type) family...		Lus10014426 [exp]	17.5	0.6413
AT1G13810			Restriction endonuclease, type...		Lus10017632 [exp]	21.4	0.5939
AT3G26330		CYP71B37	"cytochrome P450, family 71, s...		Lus10033564 [exp]	62.4	0.5286
AT2G33585			unknown protein		Lus10016044 [exp]	68.1	0.5299
AT3G02950		AtTHO7	Tho complex subunit 7/Mft1p (....		Lus10012882 [exp]	68.6	0.5424
AT4G21380		ARK3	receptor kinase 3 (.1)		Lus10027823 [exp]	75.9	0.5053

Compare expression of checked genes

Lus10034785 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.