Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G78990 297 / 1e-97 HXXXD-type acyl-transferase family protein (.1) AT1G32910 296 / 4e-97 HXXXD-type acyl-transferase family protein (.1) AT5G16410 255 / 5e-81 HXXXD-type acyl-transferase family protein (.1) AT1G31490 157 / 6e-44 HXXXD-type acyl-transferase family protein (.1) AT5G41040 86 / 4e-18 HXXXD-type acyl-transferase family protein (.1.2) AT5G63560 69 / 1e-12 HXXXD-type acyl-transferase family protein (.1) AT1G27620 67 / 5e-12 HXXXD-type acyl-transferase family protein (.1) AT3G03480 67 / 6e-12 CHAT acetyl CoA:(Z)-3-hexen-1-ol acetyltransferase (.1) AT1G24420 66 / 1e-11 HXXXD-type acyl-transferase family protein (.1) AT5G57840 65 / 2e-11 HXXXD-type acyl-transferase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10033327 [exp] 434 / 1e-151 AT1G32910 485 / 8e-170 HXXXD-type acyl-transferase family protein (.1) Lus10006333 [exp] 348 / 5e-118 AT1G32910 428 / 5e-148 HXXXD-type acyl-transferase family protein (.1) Lus10023806 [exp] 148 / 1e-40 AT1G31490 511 / 3e-180 HXXXD-type acyl-transferase family protein (.1) Lus10000557 [exp] 135 / 7e-38 AT1G78990 168 / 2e-65 HXXXD-type acyl-transferase family protein (.1) Lus10035190 [exp] 102 / 1e-23 AT5G41040 419 / 5e-144 HXXXD-type acyl-transferase family protein (.1.2) Lus10025523 [exp] 96 / 8e-22 AT5G41040 406 / 3e-139 HXXXD-type acyl-transferase family protein (.1.2) Lus10039329 [exp] 94 / 7e-21 AT5G41040 398 / 5e-136 HXXXD-type acyl-transferase family protein (.1.2) Lus10032020 [exp] 88 / 9e-19 AT5G41040 443 / 2e-151 HXXXD-type acyl-transferase family protein (.1.2) Lus10032019 [exp] 86 / 2e-18 AT5G41040 446 / 1e-154 HXXXD-type acyl-transferase family protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G003800 [exp] 321 / 2e-106 AT1G32910 533 / 0.0 HXXXD-type acyl-transferase family protein (.1) Potri.001G128100 [exp] 140 / 2e-37 AT1G31490 607 / 0.0 HXXXD-type acyl-transferase family protein (.1) Potri.014G166600 [exp] 97 / 5e-22 AT5G41040 394 / 2e-134 HXXXD-type acyl-transferase family protein (.1.2) Potri.018G104700 [exp] 79 / 5e-16 AT5G48930 489 / 5e-172 hydroxycinnamoyl-CoA shikimate/quinate hydroxycinnamoyl transferase (.1) Potri.017G068500 [exp] 77 / 1e-15 AT5G41040 583 / 0.0 HXXXD-type acyl-transferase family protein (.1.2) Potri.005G028100 [exp] 76 / 6e-15 AT5G48930 509 / 5e-180 hydroxycinnamoyl-CoA shikimate/quinate hydroxycinnamoyl transferase (.1) Potri.018G105500 [exp] 75 / 1e-14 AT5G48930 556 / 0.0 hydroxycinnamoyl-CoA shikimate/quinate hydroxycinnamoyl transferase (.1) Potri.001G326300 [exp] 74 / 3e-14 AT5G41040 677 / 0.0 HXXXD-type acyl-transferase family protein (.1.2) Potri.015G100800 [exp] 72 / 1e-13 AT5G41040 644 / 0.0 HXXXD-type acyl-transferase family protein (.1.2) Potri.005G028000 [exp] 70 / 6e-13 AT5G48930 504 / 6e-178 hydroxycinnamoyl-CoA shikimate/quinate hydroxycinnamoyl transferase (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0149 [flax] [poplar] CoA-acyltrans PF02458 [flax] [poplar] Transferase Transferase family
Representative CDS sequence Show only first row Show all	>Lus10034786 pacid=23142258 polypeptide=Lus10034786 locus=Lus10034786.g ID=Lus10034786.BGIv1.0 annot-version=v1.0 ATGGGCTCCATCTGCAACGACGACGTCCAGCTGCTCCTTGAGAACAAGCTGGACATTAACAAACAAACTTTGAAGATCCCCTCCGCCGGCGGCGGCGTAA ACAGCTTCTCCGTGACTCTGGGGAAGAAGGAGTTGGTGGCGGCGGCGCTTCCGATGCAGGAGCATTGGCTGCCGCTCTCCAACCTCGACCTCCTTCTTCC TCCGGTGGACGTTGGGGTCTTCTTCTGTTACTCCGACGGCGGTGGTGCAGCCGCGATCGGGAAACTGAAGAAGGGGCTGGCGCAGGCGCTGGTGACGTAC TACGCCTTTGCCGGCGAGGTGGTACTGAACTCTGGCGGCGAACCGGAGATTGTGTGCAACAACCGTGGAGTTGAGTTCTGGGAGGCTTATGCTGACGTGG AGCTCGGGGAGCTTGACTTGTATAACCCCGACGACGCAGTTGAAGGCAAGCTTGTCCCCGTTAAGAAAGACGGCGTCTTCGCTGTTCAGGTGACGGAACT GAGATGCGGGGAAATAGTGGTGGGATGCTCCTTCGACCACCGCATCGCTGATGCCTATTCATGCAACATGTTCCTCGTCGCATGGGCCGAGTCCACCAGA TCCAAGCCCATCTCCTCCCCGCCTTCCTTCCGTCGTTCTTTACTCAACCCTCGCCGTCCCCTTGCACTAGACTCCACCCTCGACGACATGTACGTCCCGT TATCAAGCCTCCCTCCGCCTCCGCCTCCTTCCCCAGCCGACCCTGTCCTCCTCAGCCGCATCTACTACGTCAAGTCTGGTGACCTAGCAGCCCTCCAGTC CCTCACATCCAGAACCAAGCTCGAATCCTTCTGCGCATTCCTCTGGCAGCTCGTCGCCAAATCCTCCCGCTCCGACGTCGTATCCAAGATGGGGATCGTG GTCAACGGACGGTCCAGATTGACCGACATGGACAGATACTTCGGGAACGTGTTGTCGATCCCTTACGGCGGGAAGCCCGTGGGGGAGCTCGTGTATATGC ATTTGTTCGAGGAGCAGTTGGAGGTTATTGAGAAGGAAGGCGCGTCTGTTTTCAGGCCTTTCAGATGGGACTGCGTCGTTTAA
AA sequence Show only first row Show all	>Lus10034786 pacid=23142258 polypeptide=Lus10034786 locus=Lus10034786.g ID=Lus10034786.BGIv1.0 annot-version=v1.0 MGSICNDDVQLLLENKLDINKQTLKIPSAGGGVNSFSVTLGKKELVAAALPMQEHWLPLSNLDLLLPPVDVGVFFCYSDGGGAAAIGKLKKGLAQALVTY YAFAGEVVLNSGGEPEIVCNNRGVEFWEAYADVELGELDLYNPDDAVEGKLVPVKKDGVFAVQVTELRCGEIVVGCSFDHRIADAYSCNMFLVAWAESTR SKPISSPPSFRRSLLNPRRPLALDSTLDDMYVPLSSLPPPPPPSPADPVLLSRIYYVKSGDLAALQSLTSRTKLESFCAFLWQLVAKSSRSDVVSKMGIV VNGRSRLTDMDRYFGNVLSIPYGGKPVGELVYMHLFEEQLEVIEKEGASVFRPFRWDCVV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G32910			HXXXD-type acyl-transferase fa...		Lus10034786 [exp]	0	1
AT1G32910			HXXXD-type acyl-transferase fa...		Lus10033327 [exp]	1.0	0.9920
AT5G42180		PER64	peroxidase 64, Peroxidase supe...		Lus10034547 [exp]	3.5	0.9447
AT2G21100			Disease resistance-responsive ...		Lus10025065 [exp]	3.5	0.9448
AT4G24220		5[beta]-StR, 5[...	VEIN PATTERNING 1, Δ4,5-s...		Lus10039686 [exp]	3.9	0.9311
AT3G08680			Leucine-rich repeat protein ki...		Lus10025210 [exp]	4.5	0.9456
AT5G57620	MYB	ATMYB36	myb domain protein 36 (.1)		Lus10021428 [exp]	7.5	0.9222
AT1G78990			HXXXD-type acyl-transferase fa...		Lus10000557 [exp]	8.5	0.9093
AT1G52340		SIS4, SDR1, ISI...	SHORT-CHAIN DEHYDROGENASE REDU...		Lus10021320 [exp]	9.9	0.9096
AT2G48140		EDA4	embryo sac development arrest ...		Lus10006906 [exp]	10.6	0.9068
AT5G06300		LOG7	LONELY GUY 7, Putative lysine ...		Lus10029425 [exp]	11.7	0.8687

Compare expression of checked genes

Lus10034786 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.