Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G13000 635 / 0 Protein of unknown function, DUF547 (.1.2) AT1G16750 467 / 2e-158 Protein of unknown function, DUF547 (.1) AT5G47380 181 / 8e-49 Protein of unknown function, DUF547 (.1) AT5G66600 172 / 5e-46 Protein of unknown function, DUF547 (.1.2.3.4) AT5G42690 163 / 2e-43 Protein of unknown function, DUF547 (.1.2.3) AT4G37080 157 / 8e-41 Protein of unknown function, DUF547 (.1.2.3) AT3G12540 148 / 4e-38 Protein of unknown function, DUF547 (.1) AT2G23700 149 / 2e-37 Protein of unknown function, DUF547 (.1) AT2G39690 136 / 1e-34 Protein of unknown function, DUF547 (.1.2) AT3G18900 135 / 1e-33 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10033328 [exp] 1056 / 0 AT3G13000 712 / 0.0 Protein of unknown function, DUF547 (.1.2) Lus10037293 [exp] 799 / 0 AT3G13000 663 / 0.0 Protein of unknown function, DUF547 (.1.2) Lus10035703 [exp] 629 / 0 AT1G78980 746 / 0.0 STRUBBELIG-receptor family 5 (.1) Lus10039917 [exp] 423 / 2e-140 AT1G16750 457 / 1e-155 Protein of unknown function, DUF547 (.1) Lus10027653 [exp] 418 / 2e-138 AT3G13000 459 / 4e-156 Protein of unknown function, DUF547 (.1.2) Lus10016786 [exp] 192 / 1e-52 AT5G66600 666 / 0.0 Protein of unknown function, DUF547 (.1.2.3.4) Lus10022480 [exp] 186 / 2e-50 AT5G66600 662 / 0.0 Protein of unknown function, DUF547 (.1.2.3.4) Lus10007795 [exp] 173 / 4e-45 AT5G47380 562 / 0.0 Protein of unknown function, DUF547 (.1) Lus10032768 [exp] 137 / 4e-34 AT4G37080 495 / 3e-171 Protein of unknown function, DUF547 (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G003900 [exp] 751 / 0 AT3G13000 654 / 0.0 Protein of unknown function, DUF547 (.1.2) Potri.006G216800 [exp] 442 / 5e-148 AT3G13000 437 / 1e-147 Protein of unknown function, DUF547 (.1.2) Potri.007G033100 [exp] 183 / 1e-49 AT5G66600 721 / 0.0 Protein of unknown function, DUF547 (.1.2.3.4) Potri.001G157200 [exp] 176 / 4e-47 AT5G47380 642 / 0.0 Protein of unknown function, DUF547 (.1) Potri.005G130000 [exp] 176 / 5e-47 AT5G66600 664 / 0.0 Protein of unknown function, DUF547 (.1.2.3.4) Potri.009G111100 [exp] 172 / 2e-45 AT5G66600 466 / 5e-158 Protein of unknown function, DUF547 (.1.2.3.4) Potri.010G202900 [exp] 164 / 2e-43 AT2G39690 493 / 9e-171 Protein of unknown function, DUF547 (.1.2) Potri.004G150000 [exp] 164 / 5e-43 AT5G66600 447 / 2e-150 Protein of unknown function, DUF547 (.1.2.3.4) Potri.007G041100 [exp] 149 / 7e-38 AT4G37080 577 / 0.0 Protein of unknown function, DUF547 (.1.2.3) Potri.014G034800 [exp] 144 / 3e-36 AT5G42690 476 / 4e-163 Protein of unknown function, DUF547 (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04784 [flax] [poplar] DUF547 Protein of unknown function, DUF547
Representative CDS sequence Show only first row Show all	>Lus10034787 pacid=23142171 polypeptide=Lus10034787 locus=Lus10034787.g ID=Lus10034787.BGIv1.0 annot-version=v1.0 ATGGAAGTTGCCCAGCTAACTAGGAGAAGTTGGGATGTGAATTTTCTCCTAAAAGTCAAAGGCCAAGTTAACAAGATGTGTGATTCTCCTGCCATTGGAC CTTCCTTCAGCCAAAATGAAGCCATTTCTAGAACTTCCACTTCTGGTGCAACATATGGAAACTCAGAAACCCAGTTAGATCTTGTGAACGATTATTGGTG CAGTGATTCTAAAGTATCGGCCAGCAGCATTACAGAATCTACAAGTAGCTCCGGTTTAAACGTTAAATTGGAAACGTATTATCCTTCTAGAATCCAACTT GAGAAAGATGTGCAAAGGTTACAGCAGCAATTGCAAGCAGAGATTGAGATACATGAGATACTGGGAAGTGCTATTGAGAAAAATGCAGTAAAACTATCTT CTTCATCATGCCTCCCACATGAAGCTCAGGAGGTTCTCTCTACGATTGCAGTACTGGAAGTCACAGTTACAGAACTTGAACAAAAGATTCTCTCATTACA TTTCCAACTTAGTCAAGAGAGAAATGAGCGGCGCCTTACTGAATACCGCCTGAAGAATGCATCGCTGCCTTCAGTGTCTGTTTGCACCTCTGACAACGAC AAAATAATGATTCCTTCATTGAGATGTACAAATCATTTTGACTCCGAACTTGTTAACTTGAATGGAGATATGTTACTGGAGCACCAAGGCGTGGGGCCTA CAACTTCCGCAGAAACTTCTTGTTCACACGTTACCAAGGATGCAATCAGTCCAACATCTTCTTCGGACAGCAAGAGAGAAAGTATAAAGACAGGAACCAA ACTCGGTCAGCATCTGAAACCCACGCTCTCGAAGGGAATGATATCGAAGGGCCTCTGGGATCACCCTAATAAACTTTCCGAGGAGATGGTGAAGTGTATG AAAAATATATTCATCTCCTTAGCGGATTCTGCTACACCATCAAAGTCATCTACTTTGGATAGCGAATCTTCACCTGTCTCTCCTCGTGGGCATCTTTCTA ATTCATCGTGGTGGTCATCATCCGATCGCTCTATATTATCATCATGGGTCCAGAGCCCTCAAGTCGATATCCAAAGTAACAGCGAAGTCTTATCTTCAGA AAACGTGTTTGATCCCTACAGAGTACGTGGAAAATTGAGCTGGGCTGACATCGGGAACTATGGCTTAGCCACGGAAGTCTCTTGGATGTCTGTTGGAAAG AAACAGTTAGATTATGCCTCAGGAGCATTGAGGAAGTTCAGAATGCTTGTTGAACAATTGGCCAAAGTGAACCCTATTCACTTGAGCTGCAACGAGAAGC TGGCTTTCTGGATCAACTTGTACAATGCACTGATCATGCATGCTTACTTGGCGTACGGAGTTCCCCGAAGCGATTTGAAACTGTTTTCTTTAATGCAAAA GGCTGCTTACACTGTCGGAGGCCATTCGTTCAGCGCAGCTGTGGTCGAGTACGTGATTTTGAAGATGAAACCTCCTCTCCACAGACCACAAATTGTATTT GCTGCAGAACCTAGAACCGAATTCACATCATTGTTATCTGTTCATCACAGGTTCAACTTAACACTGGTCGTTCTGTCACAGGCTTTGCTTCTTGCTCTCC ACAAACTGAAGGTGTCAGATGAACAACGAAAGTGTGCAGTCGATGCACATGAGCCGCTTGTAGCATTTGCACTGAGTTGTGGAATGTATTCATCTCCTGC GGTGAGGGTTTACACAGCTAAGAATGTAAGAGAAGAGCTCGAAGAAGCTCAGCACGAGTTCATAAGGGCTAGCGTCGGGGTGAGCAGCAGAGGGAAGCTT TTGGTGCCTAAGTTGGTGCACTGCTTTGCTAAAAGCATTGTGGATGACTCGAACTTGGCAGTATGGATCTCTCGTTACCTGCCGCCTAATCAGGCTGTCT TTGTTGAGCAATGTATTTCGCAGAGGAGGCGACAAAGCCTCTTGGCTTCCAGGAACTGTGGAATCCTTCCTTTTGATTCTCAGTTTCGGTACCTGTTCCT TCCTGATAAAGTTTCAATTCCTTGA
AA sequence Show only first row Show all	>Lus10034787 pacid=23142171 polypeptide=Lus10034787 locus=Lus10034787.g ID=Lus10034787.BGIv1.0 annot-version=v1.0 MEVAQLTRRSWDVNFLLKVKGQVNKMCDSPAIGPSFSQNEAISRTSTSGATYGNSETQLDLVNDYWCSDSKVSASSITESTSSSGLNVKLETYYPSRIQL EKDVQRLQQQLQAEIEIHEILGSAIEKNAVKLSSSSCLPHEAQEVLSTIAVLEVTVTELEQKILSLHFQLSQERNERRLTEYRLKNASLPSVSVCTSDND KIMIPSLRCTNHFDSELVNLNGDMLLEHQGVGPTTSAETSCSHVTKDAISPTSSSDSKRESIKTGTKLGQHLKPTLSKGMISKGLWDHPNKLSEEMVKCM KNIFISLADSATPSKSSTLDSESSPVSPRGHLSNSSWWSSSDRSILSSWVQSPQVDIQSNSEVLSSENVFDPYRVRGKLSWADIGNYGLATEVSWMSVGK KQLDYASGALRKFRMLVEQLAKVNPIHLSCNEKLAFWINLYNALIMHAYLAYGVPRSDLKLFSLMQKAAYTVGGHSFSAAVVEYVILKMKPPLHRPQIVF AAEPRTEFTSLLSVHHRFNLTLVVLSQALLLALHKLKVSDEQRKCAVDAHEPLVAFALSCGMYSSPAVRVYTAKNVREELEEAQHEFIRASVGVSSRGKL LVPKLVHCFAKSIVDDSNLAVWISRYLPPNQAVFVEQCISQRRRQSLLASRNCGILPFDSQFRYLFLPDKVSIP

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G13000			Protein of unknown function, D...		Lus10034787 [exp]	0	1
AT3G48210			unknown protein		Lus10018093 [exp]	1.7	0.8768
AT5G14210			Leucine-rich repeat protein ki...		Lus10035225 [exp]	4.2	0.8294
AT1G28540			unknown protein		Lus10042196 [exp]	5.3	0.8055
AT1G30820			CTP synthase family protein (....		Lus10001218 [exp]	5.5	0.8231
AT1G66310			F-box/RNI-like/FBD-like domain...		Lus10034161 [exp]	6.5	0.8059
AT1G69700		ATHVA22C	HVA22 homologue C (.1)		Lus10037191 [exp]	7.1	0.7846
AT5G14210			Leucine-rich repeat protein ki...		Lus10032059 [exp]	9.5	0.8064
AT2G27310			F-box family protein (.1)		Lus10003731 [exp]	11.7	0.8054
AT3G11920			glutaredoxin-related (.1)		Lus10034196 [exp]	11.8	0.7614
AT3G48210			unknown protein		Lus10042089 [exp]	13.0	0.8131

Compare expression of checked genes

Lus10034787 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.