Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G14610 1491 / 0 VALRS, TWN2 VALYL TRNA SYNTHETASE, TWIN 2, valyl-tRNA synthetase / valine--tRNA ligase (VALRS) (.1) AT5G16715 636 / 0 EMB2247 embryo defective 2247, ATP binding;valine-tRNA ligases;aminoacyl-tRNA ligases;nucleotide binding;ATP binding;aminoacyl-tRNA ligases (.1) AT1G27160 157 / 7e-44 valyl-tRNA synthetase / valine--tRNA ligase-related (.1) AT4G10320 144 / 6e-35 tRNA synthetase class I (I, L, M and V) family protein (.1) AT5G49030 119 / 3e-27 OVA2 ovule abortion 2, tRNA synthetase class I (I, L, M and V) family protein (.1), tRNA synthetase class I (I, L, M and V) family protein (.2), tRNA synthetase class I (I, L, M and V) family protein (.3) AT4G04350 94 / 3e-19 EMB2369 EMBRYO DEFECTIVE 2369, tRNA synthetase class I (I, L, M and V) family protein (.1) AT1G09620 45 / 0.0003 ATP binding;leucine-tRNA ligases;aminoacyl-tRNA ligases;nucleotide binding;ATP binding;aminoacyl-tRNA ligases (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10033331 [exp] 1709 / 0 AT1G14610 1580 / 0.0 VALYL TRNA SYNTHETASE, TWIN 2, valyl-tRNA synthetase / valine--tRNA ligase (VALRS) (.1) Lus10028505 [exp] 612 / 0 AT5G16715 1520 / 0.0 embryo defective 2247, ATP binding;valine-tRNA ligases;aminoacyl-tRNA ligases;nucleotide binding;ATP binding;aminoacyl-tRNA ligases (.1) Lus10009139 [exp] 413 / 1e-129 AT5G16715 1128 / 0.0 embryo defective 2247, ATP binding;valine-tRNA ligases;aminoacyl-tRNA ligases;nucleotide binding;ATP binding;aminoacyl-tRNA ligases (.1) Lus10043413 [exp] 129 / 2e-30 AT5G49030 1570 / 0.0 ovule abortion 2, tRNA synthetase class I (I, L, M and V) family protein (.1), tRNA synthetase class I (I, L, M and V) family protein (.2), tRNA synthetase class I (I, L, M and V) family protein (.3) Lus10034171 [exp] 129 / 4e-30 AT5G49030 1530 / 0.0 ovule abortion 2, tRNA synthetase class I (I, L, M and V) family protein (.1), tRNA synthetase class I (I, L, M and V) family protein (.2), tRNA synthetase class I (I, L, M and V) family protein (.3) Lus10024041 [exp] 116 / 6e-26 AT4G10320 1819 / 0.0 tRNA synthetase class I (I, L, M and V) family protein (.1) Lus10041706 [exp] 113 / 4e-25 AT4G10320 1820 / 0.0 tRNA synthetase class I (I, L, M and V) family protein (.1) Lus10015552 [exp] 96 / 8e-20 AT4G04350 1412 / 0.0 EMBRYO DEFECTIVE 2369, tRNA synthetase class I (I, L, M and V) family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G004100 [exp] 1567 / 0 AT1G14610 1601 / 0.0 VALYL TRNA SYNTHETASE, TWIN 2, valyl-tRNA synthetase / valine--tRNA ligase (VALRS) (.1) Potri.005G087850 [exp] 1489 / 0 AT1G14610 1503 / 0.0 VALYL TRNA SYNTHETASE, TWIN 2, valyl-tRNA synthetase / valine--tRNA ligase (VALRS) (.1) Potri.017G124500 [exp] 633 / 0 AT5G16715 1627 / 0.0 embryo defective 2247, ATP binding;valine-tRNA ligases;aminoacyl-tRNA ligases;nucleotide binding;ATP binding;aminoacyl-tRNA ligases (.1) Potri.004G090732 [exp] 266 / 1e-79 AT5G16715 590 / 0.0 embryo defective 2247, ATP binding;valine-tRNA ligases;aminoacyl-tRNA ligases;nucleotide binding;ATP binding;aminoacyl-tRNA ligases (.1) Potri.010G014500 [exp] 127 / 1e-29 AT5G49030 1612 / 0.0 ovule abortion 2, tRNA synthetase class I (I, L, M and V) family protein (.1), tRNA synthetase class I (I, L, M and V) family protein (.2), tRNA synthetase class I (I, L, M and V) family protein (.3) Potri.017G033200 [exp] 111 / 1e-24 AT4G10320 1940 / 0.0 tRNA synthetase class I (I, L, M and V) family protein (.1) Potri.007G126501 [exp] 102 / 6e-22 AT4G10320 1167 / 0.0 tRNA synthetase class I (I, L, M and V) family protein (.1) Potri.011G009600 [exp] 94 / 3e-19 AT4G04350 1443 / 0.0 EMBRYO DEFECTIVE 2369, tRNA synthetase class I (I, L, M and V) family protein (.1) Potri.010G207300 [exp] 44 / 0.0005 AT3G55400 935 / 0.0 OVULE ABORTION 1, methionyl-tRNA synthetase / methionine--tRNA ligase / MetRS (cpMetRS) (.1), methionyl-tRNA synthetase / methionine--tRNA ligase / MetRS (cpMetRS) (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0039 [flax] [poplar] HUP PF00133 [flax] [poplar] tRNA-synt_1 tRNA synthetases class I (I, L, M and V) CL0258 [flax] [poplar] DALR PF08264 [flax] [poplar] Anticodon_1 Anticodon-binding domain of tRNA ligase
Representative CDS sequence Show only first row Show all	>Lus10034788 pacid=23142264 polypeptide=Lus10034788 locus=Lus10034788.g ID=Lus10034788.BGIv1.0 annot-version=v1.0 ATGTCCATGCGAGATGACGATGAGAATCCGGAGCATTTTGTCGACCCAGAGACTGCTCCCGGCGAGAAGAAGAAGCTTTCTTCACAAATGGCAAAACAGT ACAGCCCAAGTGCAGTTGAGAAAGCATGGTATCCTTGGTGGGAAAAATCAGGCTACTTTGTGGCAGATGCTAAGAGCTCCAAACCACCATTTGTCATAGT TCTTCCACCCCCAAATGTGACCGGAGCCCTTCACATTGGCCATGCACTTACTGCTGCCATCGAGGATTTGATTATCCGATGGAAGAGAATGTCTGGTTTC AATGCCTTATGGGTGCCTGGCATGGACCATGCTGGGATAGCTACACAGGTTGTTGTAGAGAAGAAATTAATGCGTGAACGCCAATTGAGTAGACATGATA TGGGTCGTGAACAATTCATAGCTGAGGTATGGAAGTGGAAGGAGGAATATGGCGGAACAATATTGGGACAGTTGCGACGTTTAGGTGCCTCTCTTGACTG GTCACGTGAGTGTTTCACAATGGATGAGAAAAGATCAAGGGCTATCACGGAGGAGTTTGTTCGGCTTCACAAAGAACGTCTCATCTATAGGGATCTTCGG TTAGTAAACTGGGATTGCACCTTACGAACAGCTATATCTGATATTGAGGTGGATTATACAGATATCAAAGAGAAAACATTGTTAAAAGTTCCAGGCTATG ATAAACCTGTTGAATTTGGTGTGTTGACTTCCTTCGCTTATCCACTGGAGGGAGACCTTGGTGAAATAGTAGTTGCTACTACTAGGGTGGAAACAATGCT CGGTGACACTGCTATTGCTGTTCATCCTGATGACAAAAGATACAGTCATCTGCATGGAAAATATGCAGTACATCCATTCAATGGAAGAAAGATTCCCATT GTTTGCGACAGTATTCTTGTGGATCCCAATTTTGGGACCGGCGCTGTCAAGATCACTCCAGCACATGATCCAAATGATTTTGAGGTTGGGAAGCGGCATA ACCTTGAATTTATAAATATATTTACCGATGATGGTCATATTAACAGTGATGGGTCAGAATTCACTGGGTTGCCACGATTCAAGGCCCGTGAGGCGGTGAC TGAGGCACTGCAGAAGAAGGGATTGTACAGAGGTGCCAAGAATAATGAGATGCGCCTTGGATACTGTTCAAGAAGCAATGATGTTATTGAGCCAATGATA AAGCCCCAGTGGTTTGTTAATTGCAGTAGCATGGCCAAGCAGGCCCTTGAAGTGGCAGTGGAGGGCGAGACTCCAAAGCTTCAGTTTATTCCAAAACAAT ATTTGGCTGAATGGAGAAGATGGCTTGAAAACATCCGTGATTGGTGCATCTCAAGGCAGCTTTGGTGGGGTCATCGTATTCCTGCTTGGTATGTTACTCT TGAAGGTGATAAAGATGAATTTGGTAAACATGATGACCGCTGGGTGGTAGGAAGAGATGAGAAGCAGGCTCTAGAAGAGGCAAACCGAAAATTTGCCGGC AAGAAGTTCAAGATGATTCAAGATCCTGATGTGCTAGATACCTGGTTTTCCTCTGGGATGTTTCCATTAACTGTATTAGGATGGCCTGATGAGACAGATG ACTTGAAAGCATTTTATCCCACTTCACTCCTTGAAACCGGTCATGACATTTTGTTCTTTTGGGTTGCACGAATGGTGATGCTAGGCATGAAGCTGGGAGG TGATGTGCCATTCTCTAAGGTGTATTTACATCCAATGATTCGTGATGCACATGGACGCAAGATGTCTAAATCTCTTGGAAATGTTGTTGACCCACTGGAA GTAATTAATGGGGTATCACTTGAAGGACTTCATAAGAGACTTGAGGAGGGTAACTTGGATCAAAATGAGCTTGTCACTGCCAAAGAGGGTCAAAAGAAGG ACTTCCCTAATGGTATAGCCGAATGTGGTGCAGATGCACTACGCTTTGCCCTTGTCTCGTATACAGCTCAGTCTGATAAGATAAATTTGGACATTCAAAG AGTTGTTGGATATCGTCAGTGGTGTAATAAGCTGTGGAATGCTGTTCGATTTGCAATGAGCAAACTCGATCTCGATTACAGCCCTCCTTCAAGTTTATCA TTTGAAACCTTGCCCTTCAGCTGCAAGTGGATCCTTTCAGTCCTTAACAAGGCCATATCAAGAACTGTGACCGCAATGGATGCATATGAGCTCTCTGATG CTTCAAGTGCTGTGTATTCATGGTGGCAATATGAGTTCTGTGATGTTTTCATTGAAGCAATCAAGCCATATTTTGGTGGCGACAGTTCATCCTTTTCCTC TGAAAGGAGGGCTGCACAGGACACTCTTTGGGTATGTCTGGACAATGGATTGCGTCTGCTTCATCCATTCATGCCATTTGTTACTGAAGAATTGTGGCAA CGTCTTCCCTCAGCTAAAGGCCAAGCAAAGAACGAGTCCATCATGGTATCAGATTATCCATCACCAGTAGAGGCTTGGACCAACGAATTGGTGGAAAATG AAATGGATCTTGCTGTGTCAACTGTGCTACTGAGTGGGACAGATGCTCCTCCAGCTGGATGTGCATTTGAGAATGTCAATGTCAATCTTAAAGTGTATCT CAAGGCTGAAGGGAAGGTAGATACAGCTGCAGAGCACAAGAAGATCATAAGTAAAATGGATGAAATACAGAGGGAACGAGAGAAAATGGAGAAGACGATG AATGTATTAGGGTACAAGGACAAAGTACCGTCGCACATCCAGGATCAGAATACGGAGAAGCTGAACAAGCTCATTCAGGAATTTGAATTCGTCAAGCTAG AGAGTGCACGACTAGAAGCTGAGATTGGCTCATCGGAGCAAGCAGCAACAACCTAA
AA sequence Show only first row Show all	>Lus10034788 pacid=23142264 polypeptide=Lus10034788 locus=Lus10034788.g ID=Lus10034788.BGIv1.0 annot-version=v1.0 MSMRDDDENPEHFVDPETAPGEKKKLSSQMAKQYSPSAVEKAWYPWWEKSGYFVADAKSSKPPFVIVLPPPNVTGALHIGHALTAAIEDLIIRWKRMSGF NALWVPGMDHAGIATQVVVEKKLMRERQLSRHDMGREQFIAEVWKWKEEYGGTILGQLRRLGASLDWSRECFTMDEKRSRAITEEFVRLHKERLIYRDLR LVNWDCTLRTAISDIEVDYTDIKEKTLLKVPGYDKPVEFGVLTSFAYPLEGDLGEIVVATTRVETMLGDTAIAVHPDDKRYSHLHGKYAVHPFNGRKIPI VCDSILVDPNFGTGAVKITPAHDPNDFEVGKRHNLEFINIFTDDGHINSDGSEFTGLPRFKAREAVTEALQKKGLYRGAKNNEMRLGYCSRSNDVIEPMI KPQWFVNCSSMAKQALEVAVEGETPKLQFIPKQYLAEWRRWLENIRDWCISRQLWWGHRIPAWYVTLEGDKDEFGKHDDRWVVGRDEKQALEEANRKFAG KKFKMIQDPDVLDTWFSSGMFPLTVLGWPDETDDLKAFYPTSLLETGHDILFFWVARMVMLGMKLGGDVPFSKVYLHPMIRDAHGRKMSKSLGNVVDPLE VINGVSLEGLHKRLEEGNLDQNELVTAKEGQKKDFPNGIAECGADALRFALVSYTAQSDKINLDIQRVVGYRQWCNKLWNAVRFAMSKLDLDYSPPSSLS FETLPFSCKWILSVLNKAISRTVTAMDAYELSDASSAVYSWWQYEFCDVFIEAIKPYFGGDSSSFSSERRAAQDTLWVCLDNGLRLLHPFMPFVTEELWQ RLPSAKGQAKNESIMVSDYPSPVEAWTNELVENEMDLAVSTVLLSGTDAPPAGCAFENVNVNLKVYLKAEGKVDTAAEHKKIISKMDEIQREREKMEKTM NVLGYKDKVPSHIQDQNTEKLNKLIQEFEFVKLESARLEAEIGSSEQAATT

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G14610		VALRS, TWN2	VALYL TRNA SYNTHETASE, TWIN 2,...		Lus10034788 [exp]	0	1
AT4G13780			methionine--tRNA ligase, putat...		Lus10016658 [exp]	1.0	0.9711
AT5G17310		AtUGP2, UGP2	UDP-glucose pyrophosphorylase ...		Lus10041971 [exp]	1.4	0.9624
AT5G09590		HSC70-5, mtHSC7...	HEAT SHOCK COGNATE, mitochondr...		Lus10041999 [exp]	4.2	0.9576
AT3G44330			unknown protein		Lus10013307 [exp]	5.4	0.9219
AT3G56150		ATTIF3C1, ATEIF...	eukaryotic translation initiat...		Lus10027702 [exp]	8.5	0.9458
AT5G26360			TCP-1/cpn60 chaperonin family ...		Lus10034682 [exp]	8.9	0.9443
AT5G02970			alpha/beta-Hydrolases superfam...		Lus10026484 [exp]	9.5	0.9213
AT5G53480			ARM repeat superfamily protein...		Lus10041453 [exp]	11.2	0.9414
AT5G28850			Calcium-binding EF-hand family...		Lus10032772 [exp]	12.0	0.9179
AT5G14520			pescadillo-related (.1)		Lus10000618 [exp]	15.0	0.9371

Compare expression of checked genes

Lus10034788 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.