Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G78980 481 / 1e-161 SRF5 STRUBBELIG-receptor family 5 (.1) AT3G13065 392 / 2e-127 SRF4 STRUBBELIG-receptor family 4 (.1) AT1G53730 378 / 1e-121 SRF6 STRUBBELIG-receptor family 6 (.1.2) AT3G14350 372 / 6e-120 SRF7 STRUBBELIG-receptor family 7 (.1.2.3) AT4G22130 358 / 6e-116 SRF8 STRUBBELIG-receptor family 8 (.1.2) AT4G03390 306 / 2e-93 SRF3 STRUBBELIG-receptor family 3 (.1) AT2G20850 296 / 9e-90 SRF1 STRUBBELIG-receptor family 1 (.1) AT1G11130 270 / 3e-80 SRF9, SCM, SUB STRUBBELIG-RECEPTOR FAMILY 9, SCRAMBLED, Leucine-rich repeat protein kinase family protein (.1) AT3G59350 234 / 1e-70 Protein kinase superfamily protein (.1.2.3) AT2G30740 233 / 2e-70 Protein kinase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10033333 [exp] 1120 / 0 AT1G78980 803 / 0.0 STRUBBELIG-receptor family 5 (.1) Lus10035703 [exp] 837 / 0 AT1G78980 746 / 0.0 STRUBBELIG-receptor family 5 (.1) Lus10037294 [exp] 590 / 0 AT1G78980 525 / 0.0 STRUBBELIG-receptor family 5 (.1) Lus10003926 [exp] 423 / 5e-139 AT1G53730 885 / 0.0 STRUBBELIG-receptor family 6 (.1.2) Lus10037464 [exp] 416 / 7e-137 AT1G53730 824 / 0.0 STRUBBELIG-receptor family 6 (.1.2) Lus10015549 [exp] 366 / 3e-115 AT4G22130 972 / 0.0 STRUBBELIG-receptor family 8 (.1.2) Lus10020030 [exp] 342 / 6e-108 AT4G22130 947 / 0.0 STRUBBELIG-receptor family 8 (.1.2) Lus10018459 [exp] 318 / 6e-99 AT4G03390 594 / 0.0 STRUBBELIG-receptor family 3 (.1) Lus10011223 [exp] 303 / 1e-93 AT4G03390 591 / 0.0 STRUBBELIG-receptor family 3 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G001200 [exp] 779 / 0 AT1G78980 817 / 0.0 STRUBBELIG-receptor family 5 (.1) Potri.007G002600 [exp] 752 / 0 AT1G78980 499 / 1e-168 STRUBBELIG-receptor family 5 (.1) Potri.001G161600 [exp] 407 / 5e-133 AT1G53730 590 / 0.0 STRUBBELIG-receptor family 6 (.1.2) Potri.003G073700 [exp] 395 / 3e-128 AT1G53730 575 / 0.0 STRUBBELIG-receptor family 6 (.1.2) Potri.004G005301 [exp] 368 / 1e-117 AT4G22130 906 / 0.0 STRUBBELIG-receptor family 8 (.1.2) Potri.011G010500 [exp] 366 / 4e-117 AT4G22130 916 / 0.0 STRUBBELIG-receptor family 8 (.1.2) Potri.019G103900 [exp] 311 / 3e-95 AT4G03390 801 / 0.0 STRUBBELIG-receptor family 3 (.1) Potri.004G037000 [exp] 306 / 7e-94 AT4G03390 645 / 0.0 STRUBBELIG-receptor family 3 (.1) Potri.011G045600 [exp] 304 / 4e-93 AT4G03390 617 / 0.0 STRUBBELIG-receptor family 3 (.1) Potri.013G144600 [exp] 303 / 2e-92 AT4G03390 783 / 0.0 STRUBBELIG-receptor family 3 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF00069 [flax] [poplar] Pkinase Protein kinase domain CL0022 [flax] [poplar] LRR PF00560 [flax] [poplar] LRR_1 Leucine Rich Repeat CL0022 [flax] [poplar] PF08263 [flax] [poplar] LRRNT_2 Leucine rich repeat N-terminal domain
Representative CDS sequence Show only first row Show all	>Lus10034790 pacid=23142262 polypeptide=Lus10034790 locus=Lus10034790.g ID=Lus10034790.BGIv1.0 annot-version=v1.0 ATGTATACGAGCTTAAATTCTCCGTCCAGGTTAGATGGATGGAAGGCTAGCGGCGGTGATCCCTGTGGCGAGTCTTGGGATGGGATCACCTGCGCAGGCT CCAAAGTCACTGAAATAAGGTTATCAGGGTTGGGACTGTCTGGAACTTTGGGCTACCAGCTCTCAAACTTGAAATCTGTCACCTACTTTGACGTGAGTAA GAACAAACTTAAGCAGGAGGTTCCTTATCAGCTCCCTCCAAATGCAGTTTACATAGATCTATCCAAGAACCAGTTTACAGGGAATGTACCTTTCTCAATC TCCCTCATGACTGACCTTGAGCATTTAGATGTTAGCAAGAACAAGCTCAACGGGCAGCTGACTGACATGTTTCAGAAACTTTCCAAGCTCAAAATCATGG ATCTTTCGAACAACAAAATGTCAGGAGATCTGCCACAGAGCCTTTCATCGCTTGGAAGCTTGACTCAATTGTTCCTGCAGAACAATAAGTTCACAGGGAA GATCAATATGCTAGGAAATCTTCCTCTTGATGAACTGAACCTCGCCAACAACAAGTTCACTGGTTGGATCCCTGCAAAGCTCGTCGACATCAACAACTTA GTGACTGATGGGAATAAGTGGTCGAAAGGGGCAGCACCACCGGGGCAGAAACAAGCGGCGAATGCAAAGGGAGGAGGTGGGGGAGCGAAGGTATCAACAG CAGTAATGATATCTCTGATAGTACTTGGAGTGGTCATCATCATTGTACTTCTCATCATCGTCTTCTTCTCGAGGAAGAAATCTTCGTCTTCCCCTTCTTC CTTCCTCGACGACGAAGAAAAGATGAGTCGCAAGGCTGTCACTCCTCTCGCCACTTCCCACGAGCTCTCCCGCGACCCTTACTCCCCTTTTCATCGCAAC ATTAGAGAGTCGTTTGAATCGGCGGCCTCATTTGACATTAAGAAGCTGCAGAAGGTTCCGCTGCCGACAGGCTTTGCGCAGTCACTGAACGACAACGAGT TCGCTACCCGCCTCAACTCCAAGAAAGACCCCGCCCCTGCTAAGTCTATATGTTACTATTTGTCGGACTTGCAGACTGCCACCGCTGATTTCGCACCGGG ACGTCTTCTCGGTGAGGGAACTCTCGGCCCCGTCTACATAGCCAAATACCCTGACGGCAAGGTGTTGGCTGTGAAGAAGATTGATTCGGCGAACTTCCAC GAGGGGAAGGCAAGCGAGGAGTTTGCAGAGATAGTAAGCAGCATTTCGAAAATTCACCACCCAAACATTGTAGAACTAGTGGGTTCGTGTTCGGAGCAAG GGCACAACATGCTGGTGTACGACTACTACAGGAACGGATCACTTCATGACTTCCTTCACAATTCTGGGGATTTCAGTAACCCTTTGACTTGGAACACCCG CGTCCGCATCGCTCTCGCCACTGCCAGGGCCGTCGAGCATCTACACGAAGCATGCTCTCCGTCTGTGATCCACAAGAACATCAAATCGTCCAACATCTTA CTCGACCTCGATCTCAATCCTCATCTTTGCGATTACGGCTTGGCCAACTTCCACACGAGGACAAGCCAGAACTTAGGAGTAGGTTACAATGCCCCAGAGT GCACAATGCCGTCAAAATACACGATAAAGAGCGACATCTACAGTTTCGGAGTTGTCATGCTAGAGCTACTTACGGGCCGTATGCCTTACGATCAGTCGAA GCCGAAATCAGAACAAGCACTGGTGAGATGGGCGACCCCGCAGCTACACGACATAGATGCATTGGAGAAGATGGTGGATCCAGCACTTCGTGGCCTTTAC CCTCCTAAATCGATCTCAAGATTCGCTGACATAGTCGCCCTCTGCGTCCAGGTGGGACCAGAATTTCGGCCACCATTGTCGGAGGTGGTGCAGTCGTTAT TGACGTTGGTTCAACATTCGAACATGAACATGAAAGATGATCTTACTGCTTCTCGTCAAGCCGAAGACCTAGATTTTTAA
AA sequence Show only first row Show all	>Lus10034790 pacid=23142262 polypeptide=Lus10034790 locus=Lus10034790.g ID=Lus10034790.BGIv1.0 annot-version=v1.0 MYTSLNSPSRLDGWKASGGDPCGESWDGITCAGSKVTEIRLSGLGLSGTLGYQLSNLKSVTYFDVSKNKLKQEVPYQLPPNAVYIDLSKNQFTGNVPFSI SLMTDLEHLDVSKNKLNGQLTDMFQKLSKLKIMDLSNNKMSGDLPQSLSSLGSLTQLFLQNNKFTGKINMLGNLPLDELNLANNKFTGWIPAKLVDINNL VTDGNKWSKGAAPPGQKQAANAKGGGGGAKVSTAVMISLIVLGVVIIIVLLIIVFFSRKKSSSSPSSFLDDEEKMSRKAVTPLATSHELSRDPYSPFHRN IRESFESAASFDIKKLQKVPLPTGFAQSLNDNEFATRLNSKKDPAPAKSICYYLSDLQTATADFAPGRLLGEGTLGPVYIAKYPDGKVLAVKKIDSANFH EGKASEEFAEIVSSISKIHHPNIVELVGSCSEQGHNMLVYDYYRNGSLHDFLHNSGDFSNPLTWNTRVRIALATARAVEHLHEACSPSVIHKNIKSSNIL LDLDLNPHLCDYGLANFHTRTSQNLGVGYNAPECTMPSKYTIKSDIYSFGVVMLELLTGRMPYDQSKPKSEQALVRWATPQLHDIDALEKMVDPALRGLY PPKSISRFADIVALCVQVGPEFRPPLSEVVQSLLTLVQHSNMNMKDDLTASRQAEDLDF

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G78980		SRF5	STRUBBELIG-receptor family 5 (...		Lus10034790 [exp]	0	1
AT5G64440		ATFAAH	fatty acid amide hydrolase (.1...		Lus10035974 [exp]	1.4	0.9964
					Lus10038743 [exp]	2.0	0.9945
AT3G19550			unknown protein		Lus10013901 [exp]	3.0	0.9931
AT1G50380			Prolyl oligopeptidase family p...		Lus10032964 [exp]	4.5	0.9873
AT3G19550			unknown protein		Lus10002114 [exp]	4.9	0.9875
AT5G46090			Protein of unknown function (D...		Lus10018635 [exp]	6.3	0.9749
AT4G32110			Beta-1,3-N-Acetylglucosaminylt...		Lus10042384 [exp]	6.5	0.9835
AT3G19550			unknown protein		Lus10002115 [exp]	6.5	0.9800
AT1G74220			unknown protein		Lus10040518 [exp]	9.0	0.9723
AT1G73110			P-loop containing nucleoside t...		Lus10024092 [exp]	9.9	0.9540

Compare expression of checked genes

Lus10034790 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.