Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G13062 326 / 1e-107 Polyketide cyclase/dehydrase and lipid transport superfamily protein (.1.2.3) AT1G55960 324 / 2e-107 Polyketide cyclase/dehydrase and lipid transport superfamily protein (.1) AT5G54170 119 / 4e-29 Polyketide cyclase/dehydrase and lipid transport superfamily protein (.1) AT4G14500 105 / 1e-24 Polyketide cyclase/dehydrase and lipid transport superfamily protein (.1.2) AT1G64720 100 / 6e-23 CP5 Polyketide cyclase/dehydrase and lipid transport superfamily protein (.1) AT3G23080 95 / 6e-21 Polyketide cyclase/dehydrase and lipid transport superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10033334 [exp] 531 / 0 AT1G55960 384 / 5e-132 Polyketide cyclase/dehydrase and lipid transport superfamily protein (.1) Lus10033247 [exp] 104 / 3e-24 AT1G64720 523 / 0.0 Polyketide cyclase/dehydrase and lipid transport superfamily protein (.1) Lus10032938 [exp] 100 / 1e-22 AT1G64720 437 / 2e-152 Polyketide cyclase/dehydrase and lipid transport superfamily protein (.1) Lus10041166 [exp] 97 / 1e-21 AT4G14500 607 / 0.0 Polyketide cyclase/dehydrase and lipid transport superfamily protein (.1.2) Lus10021883 [exp] 96 / 5e-21 AT4G14500 605 / 0.0 Polyketide cyclase/dehydrase and lipid transport superfamily protein (.1.2) Lus10008281 [exp] 73 / 3e-14 AT1G64720 374 / 1e-130 Polyketide cyclase/dehydrase and lipid transport superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G002700 [exp] 343 / 1e-114 AT3G13062 390 / 5e-134 Polyketide cyclase/dehydrase and lipid transport superfamily protein (.1.2.3) Potri.014G001100 [exp] 284 / 1e-91 AT3G13062 416 / 3e-144 Polyketide cyclase/dehydrase and lipid transport superfamily protein (.1.2.3) Potri.001G450100 [exp] 106 / 8e-25 AT1G64720 489 / 6e-173 Polyketide cyclase/dehydrase and lipid transport superfamily protein (.1) Potri.011G151500 [exp] 102 / 2e-23 AT1G64720 515 / 0.0 Polyketide cyclase/dehydrase and lipid transport superfamily protein (.1) Potri.015G005000 [exp] 102 / 3e-23 AT1G64720 474 / 1e-166 Polyketide cyclase/dehydrase and lipid transport superfamily protein (.1) Potri.012G021400 [exp] 98 / 9e-22 AT1G64720 478 / 2e-168 Polyketide cyclase/dehydrase and lipid transport superfamily protein (.1) Potri.008G162600 [exp] 95 / 5e-21 AT4G14500 581 / 0.0 Polyketide cyclase/dehydrase and lipid transport superfamily protein (.1.2) Potri.010G076500 [exp] 91 / 2e-19 AT4G14500 571 / 0.0 Polyketide cyclase/dehydrase and lipid transport superfamily protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0209 [flax] [poplar] Bet_v_1_like PF01852 [flax] [poplar] START START domain
Representative CDS sequence Show only first row Show all	>Lus10034791 pacid=23142270 polypeptide=Lus10034791 locus=Lus10034791.g ID=Lus10034791.BGIv1.0 annot-version=v1.0 ATGGCGATTCTTCAGTATCTCCACTCTCTACATCACGGATTCCAATCTCTCCTCCTGAATCGCGCTTCCGATTCCCCGACCTGGTTTCCAGTCTTCGGCT ATGGCTCCGCTACTCTCCTTTCCCTTCTCCTTATCCTCCTCCTCCACTTCTCCAAGCGCCTCCTCCTCTCCGTCTTCTCTTCCTCTTCTTCCCAATCTTC TTCTCCTCTTTCCCCCACCGCTGCCGTTGCTGCTCCTGCTTCTATCGCTTCTAACCCTGAATTCAGTTCTTCGTCAGAGCTGGTTTCAGAAGCGGATTTG AACTTCTTGGTTAAAAATCTGGATGAGGTTGAGCAGAGCGAGAGCTGGGAACCTGTTGTTGATAAGAGAAACAATCTCTTACATTATACAGCGAAATGCT GCAAACCCAAGAATGCACCTGTTACGTACTTGAGTGTGACGGTTTTCGAGAACTGCTCCCCTGAATTGCTTAGGGACTTCTACATGGATAACAACTACAG AAAGCAGTGGGACAAAACTGTGGTTGAACATGAGCAACTCCAAGTGGATAGATCTAATGGAACTGAAATTGGTCGCACTATTAAGAAATTCCCACTTTTG ACACCTAGGGAGTACATACTGGCGTGGAGATTGTGGGAAGGAAATGATGAAACATTCTACTGTTTTATTAAGGAATGTGAACATCAGACAGCACCATTGC GGAAAAAGTATGTACGAGTCAGACACTTCAGATCTGGCTGGAGAATTAGGAAAGGCAAGTTCTTGATTACGACATTGCGTTTTGGCCTTCTTTTGAAATT TCAAATTTGTGGTCTTGAACTCTTCAATGTCAAAACACCAGCTCCTCAGTTGAAGTATTGCTATCTGAGGTTAGAACATTTAGTCCTTCAAAGGCTGAAT GACTTGACGAACTCTTTGTATGCCTGGTTTGTAACAGTTCCTGGTAGAGATGCTTGTGAGATCAAAATGTATCACCAAGAAGATGCTGGTCTAAATGTGG AGATGGCAAAATTGGCTTTTGCCAGGGGCATATGGAGCTACGTGTGTAAAATGCATACAGCACTATGCAAGTACTCGCCAAGTAATCAACTTGTAATGGA CCCTATTTCTGCCCTCTCTCTGGTTCAGAAGGTTCCCCCTGGAATTGAAGCAGCAGTCAGTGTCAAGGGCACACCAGAGAACCCTACTGCTCCTGTATCA ACCAGTGTGACCGGGAGTCGGAAGAAGAGACTAGAGAAGAAGTCATCACGAAAAGCAGTGACGAATGGGTTGCTGCTGATTGGAGGGGTCATCTGCCTGT CCCGTGGTAACTGTAGCCTGGGGGCAAAAGTTGCCATGGGTTACCTCTTGACGAAGCTTGGGAAACGAAATGCTAAACAATCCCTTGAGCGGTAA
AA sequence Show only first row Show all	>Lus10034791 pacid=23142270 polypeptide=Lus10034791 locus=Lus10034791.g ID=Lus10034791.BGIv1.0 annot-version=v1.0 MAILQYLHSLHHGFQSLLLNRASDSPTWFPVFGYGSATLLSLLLILLLHFSKRLLLSVFSSSSSQSSSPLSPTAAVAAPASIASNPEFSSSSELVSEADL NFLVKNLDEVEQSESWEPVVDKRNNLLHYTAKCCKPKNAPVTYLSVTVFENCSPELLRDFYMDNNYRKQWDKTVVEHEQLQVDRSNGTEIGRTIKKFPLL TPREYILAWRLWEGNDETFYCFIKECEHQTAPLRKKYVRVRHFRSGWRIRKGKFLITTLRFGLLLKFQICGLELFNVKTPAPQLKYCYLRLEHLVLQRLN DLTNSLYAWFVTVPGRDACEIKMYHQEDAGLNVEMAKLAFARGIWSYVCKMHTALCKYSPSNQLVMDPISALSLVQKVPPGIEAAVSVKGTPENPTAPVS TSVTGSRKKRLEKKSSRKAVTNGLLLIGGVICLSRGNCSLGAKVAMGYLLTKLGKRNAKQSLER

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G13062			Polyketide cyclase/dehydrase a...		Lus10034791 [exp]	0	1
AT5G47560		ATTDT, ATSDAT	tonoplast dicarboxylate transp...		Lus10039023 [exp]	1.0	0.9009
AT1G52080		AR791	actin binding protein family (...		Lus10038254 [exp]	6.3	0.8677
AT1G58030		CAT2	cationic amino acid transporte...		Lus10020320 [exp]	7.9	0.8983
AT5G67290			FAD-dependent oxidoreductase f...		Lus10030334 [exp]	9.5	0.8490
AT3G07700			Protein kinase superfamily pro...		Lus10006363 [exp]	15.0	0.8600
AT1G58030		CAT2	cationic amino acid transporte...		Lus10005671 [exp]	17.9	0.8662
AT1G10150		ATPP2-A10	Carbohydrate-binding protein (...		Lus10018663 [exp]	18.8	0.8826
AT1G70160			unknown protein		Lus10010721 [exp]	20.2	0.8805
AT1G06400		ARA2, AtRABA1a,...	ARABIDOPSIS THALIANA RAB GTPAS...		Lus10029789 [exp]	21.5	0.8579
AT1G55960			Polyketide cyclase/dehydrase a...		Lus10033334 [exp]	22.0	0.8669

Compare expression of checked genes

Lus10034791 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.