Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G13060 571 / 0 ECT5 evolutionarily conserved C-terminal region 5 (.1.2) AT3G13460 316 / 8e-99 ECT2 evolutionarily conserved C-terminal region 2 (.1.2.3.4) AT1G55500 313 / 2e-98 ECT4 evolutionarily conserved C-terminal region 4 (.1.2.3) AT1G27960 311 / 2e-98 ECT9 evolutionarily conserved C-terminal region 9 (.1) AT5G61020 305 / 2e-96 ECT3 evolutionarily conserved C-terminal region 3 (.1.2) AT3G17330 290 / 7e-91 ECT6 evolutionarily conserved C-terminal region 6 (.1.2) AT5G58190 282 / 2e-87 ECT10 evolutionarily conserved C-terminal region 10 (.1.2) AT1G79270 277 / 1e-85 ECT8 evolutionarily conserved C-terminal region 8 (.1) AT1G48110 276 / 6e-84 ECT7 evolutionarily conserved C-terminal region 7 (.1.2) AT3G03950 264 / 9e-82 ECT1 evolutionarily conserved C-terminal region 1 (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10033335 [exp] 1167 / 0 AT3G13060 653 / 0.0 evolutionarily conserved C-terminal region 5 (.1.2) Lus10037028 [exp] 390 / 5e-128 AT3G13060 415 / 6e-138 evolutionarily conserved C-terminal region 5 (.1.2) Lus10015778 [exp] 343 / 6e-113 AT3G13060 360 / 5e-120 evolutionarily conserved C-terminal region 5 (.1.2) Lus10027582 [exp] 347 / 4e-111 AT5G58190 417 / 6e-140 evolutionarily conserved C-terminal region 10 (.1.2) Lus10002624 [exp] 303 / 8e-95 AT3G13460 449 / 8e-151 evolutionarily conserved C-terminal region 2 (.1.2.3.4) Lus10020269 [exp] 301 / 1e-92 AT3G13460 443 / 8e-147 evolutionarily conserved C-terminal region 2 (.1.2.3.4) Lus10017111 [exp] 296 / 6e-91 AT1G48110 597 / 0.0 evolutionarily conserved C-terminal region 7 (.1.2) Lus10018343 [exp] 290 / 9e-89 AT1G48110 592 / 0.0 evolutionarily conserved C-terminal region 7 (.1.2) Lus10037364 [exp] 268 / 1e-81 AT1G09810 345 / 3e-113 evolutionarily conserved C-terminal region 11 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G002800 [exp] 793 / 0 AT3G13060 732 / 0.0 evolutionarily conserved C-terminal region 5 (.1.2) Potri.014G001000 [exp] 781 / 0 AT3G13060 756 / 0.0 evolutionarily conserved C-terminal region 5 (.1.2) Potri.001G056100 [exp] 429 / 1e-143 AT3G13060 431 / 5e-144 evolutionarily conserved C-terminal region 5 (.1.2) Potri.018G149800 [exp] 393 / 9e-129 AT5G58190 417 / 3e-139 evolutionarily conserved C-terminal region 10 (.1.2) Potri.006G079900 [exp] 380 / 1e-123 AT5G58190 420 / 1e-140 evolutionarily conserved C-terminal region 10 (.1.2) Potri.001G002000 [exp] 330 / 6e-105 AT3G13460 546 / 0.0 evolutionarily conserved C-terminal region 2 (.1.2.3.4) Potri.003G222700 [exp] 330 / 1e-104 AT3G13460 520 / 4e-178 evolutionarily conserved C-terminal region 2 (.1.2.3.4) Potri.010G152300 [exp] 303 / 7e-93 AT1G48110 572 / 0.0 evolutionarily conserved C-terminal region 7 (.1.2) Potri.008G100200 [exp] 302 / 1e-92 AT1G48110 535 / 0.0 evolutionarily conserved C-terminal region 7 (.1.2) Potri.019G034300 [exp] 296 / 1e-92 AT3G13460 412 / 9e-137 evolutionarily conserved C-terminal region 2 (.1.2.3.4)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0178 [flax] [poplar] PUA PF04146 [flax] [poplar] YTH YT521-B-like domain
Representative CDS sequence Show only first row Show all	>Lus10034792 pacid=23142175 polypeptide=Lus10034792 locus=Lus10034792.g ID=Lus10034792.BGIv1.0 annot-version=v1.0 ATGGATGCAGAAGAGAAACTTCTTCAACCAGATAACATGAAGGACAGGGATGCTGTTACTATAGGTCATCCAACGCACGGCGCTCAGTTCGGTTCTTTTG GCCCAAGTGGAGATCAAACGGTCTATCCTCCGAATATTTATTCCCCTCAGCCACAAGCTTTCTACTACAGAGGTTATGACAATGGAAGTGGCGAGTGGGA TGAATATTCTCCCTATATCAATGCTGAAGGATTGGACGTGGGATCTGGAGGCATCTATAATGAGAATCCATCTCTTGTCTTTCATAGTGGATATGGGTAC GGGCCACAAATTCCATACGGGCCATATTCTCCCGTGACTCCACCTTTGCCTTCCGTAGGTGGAGATGCACAGTTTTACCCTCCGCAACAAGTCCAATTTT CTGGCCCCCCTTATTACCAGCAGCTTGGCCCTCCTAATATGCCATATATGTCTCCCCACACACCAGTCTCACAGCCTGAATTCAATGCCTTGCCAGCTAT TGATCAACATGGTGAGAACATGCTGTCTAGACCAAGGCCTACATATCCTCTTCCCTCGGGATCTTTTGGTAGAGGCAATGCTCCAGGAAATCTTGGTGGT CTTGGTTTCCATGAGGTGTTTGATGGATCAAGGTCTGGAGGAATATGGTCTGATTACGCAAGGCCTTCTGATAGGCATAGGCCTTTGACTCCCTACTCTC CTGCAGTATCCCCACAACCTACCCCTCCCTTTGGATCTTTTGGGCAGAATATGGGAATGGCACCTCAGCAACCGAGGTCCATGTACGGCTTTGGCTCTGG TTCAAGTTCCTTTGGTAGAGGCTATATGCACGGTGGTTTCAATCAAGGGCCCAGCTTCAGCAATGCTTCTGTTAAGGGCATGGGGACGAACAGTCGTGGT TGGCTTTCCTTTGATAACAATAAATGGCGTGGAAATGGTAGTGTTCCTCTGTGTGGCTGTAACGGAAACCTTGATATCCTGAATGAGCAAAACCGAGGAC CAAGGGCTTCAAAGCCTAAGAATCAAAACACTACAGACCATGCTGGTGCTTCAGTTGAGAGCACCAAATGTAGCAAATCTCCCCAACAGATCAAAGACGA CTCGTACAATCGACCTGATTTTGTCACTGAATACAAGGAAGCTAAGTTCTTCATTATCAAATCATACAGTGAAGATAATGTCCACAAGAGCATTAAGTAT GGTATTTGGGCTAGCACACCCAATGGGAACAAAAAATTGGATGCTGCTTATGCTGACGCCAAGACAAAAGAAGATCCATGCCCAGTGTTCCTCTTATTTT CAGTTAACGCGAGTGCTCAGTTTTGTGGAGTTGCTGAAATGACAGGACCGGTCAATTTCGAGAAGAGTGTGGATTACTGGCAGCAGGATAAATGGAGTGG GCAGTTTCCTGTCAAGTGGCACATGATTAAGGATGTTCCCAACAGTCAGTTCCGCCATATAGTTCTGGAAAATAATGATAATAAGCCCGTCACTAATAGT CGAGACACACAAGAGGTTAAACTGGAGCAAGGAATCGAGATGTTGAGCATATTCAAGAACTACGAGACGGATATGTCCATCCTGGACGACTTTGAATTTT ACGAAGACAGACAGAAAGCCATGCAAGAAAGGAAAGCCAGGCAGCAGCAGCAGCAGCAGCAGCAACAAGTGGCTGCAATTCATGACAGCGTTGCTCCTGA AAAAGAGAGTAGCAATGCAGCAAACCTTCCAGGTAGTTTCTTAAAGCAGATGTCCAAGAGCTTTGCTCAGGTGGTGCGCTTAGATGACAATGCTACTAAA GAAGGTGTCTCAGATGGTTCCATGGGTGCCACCATAGAAGAAGCTACGACTATGGCAGCACCAGTCTCGATTTCTCCGACCATCATTGGCGGATAG
AA sequence Show only first row Show all	>Lus10034792 pacid=23142175 polypeptide=Lus10034792 locus=Lus10034792.g ID=Lus10034792.BGIv1.0 annot-version=v1.0 MDAEEKLLQPDNMKDRDAVTIGHPTHGAQFGSFGPSGDQTVYPPNIYSPQPQAFYYRGYDNGSGEWDEYSPYINAEGLDVGSGGIYNENPSLVFHSGYGY GPQIPYGPYSPVTPPLPSVGGDAQFYPPQQVQFSGPPYYQQLGPPNMPYMSPHTPVSQPEFNALPAIDQHGENMLSRPRPTYPLPSGSFGRGNAPGNLGG LGFHEVFDGSRSGGIWSDYARPSDRHRPLTPYSPAVSPQPTPPFGSFGQNMGMAPQQPRSMYGFGSGSSSFGRGYMHGGFNQGPSFSNASVKGMGTNSRG WLSFDNNKWRGNGSVPLCGCNGNLDILNEQNRGPRASKPKNQNTTDHAGASVESTKCSKSPQQIKDDSYNRPDFVTEYKEAKFFIIKSYSEDNVHKSIKY GIWASTPNGNKKLDAAYADAKTKEDPCPVFLLFSVNASAQFCGVAEMTGPVNFEKSVDYWQQDKWSGQFPVKWHMIKDVPNSQFRHIVLENNDNKPVTNS RDTQEVKLEQGIEMLSIFKNYETDMSILDDFEFYEDRQKAMQERKARQQQQQQQQQVAAIHDSVAPEKESSNAANLPGSFLKQMSKSFAQVVRLDDNATK EGVSDGSMGATIEEATTMAAPVSISPTIIGG

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G13060		ECT5	evolutionarily conserved C-ter...		Lus10034792 [exp]	0	1
AT1G63700		EMB71, MAPKKK4,...	YODA, MAP KINASE KINASE KINASE...		Lus10039250 [exp]	1.4	0.9117
AT5G02810		APRR7, PRR7	pseudo-response regulator 7 (....		Lus10019899 [exp]	1.4	0.9049
AT5G49970		PDX3, ATPPOX	HOMOLOG OF YEAST PYRIDOXINE AU...		Lus10002098 [exp]	3.2	0.8855
AT1G63700		EMB71, MAPKKK4,...	YODA, MAP KINASE KINASE KINASE...		Lus10027496 [exp]	3.5	0.8905
AT4G02030			Vps51/Vps67 family (components...		Lus10041387 [exp]	3.5	0.8869
AT3G49490			unknown protein		Lus10015581 [exp]	4.6	0.8801
AT5G64220	CAMTA		Calmodulin-binding transcripti...		Lus10036162 [exp]	4.9	0.8811
AT3G51130			unknown protein		Lus10014270 [exp]	7.5	0.8784
AT2G23460		ATXLG1, XLG1	extra-large G-protein 1 (.1)		Lus10019655 [exp]	7.9	0.8715
AT5G51070		SAG15, CLPD, ER...	SENESCENCE ASSOCIATED GENE 15,...		Lus10043014 [exp]	8.4	0.8634

Compare expression of checked genes

Lus10034792 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.