Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G05350 47 / 8e-07 RING/U-box superfamily protein (.1) AT5G59550 48 / 9e-07 zinc finger (C3HC4-type RING finger) family protein (.1) AT5G64920 47 / 2e-06 CIP8 COP1-interacting protein 8 (.1) AT2G46493 45 / 3e-06 RING/U-box superfamily protein (.1) AT1G60360 46 / 4e-06 RING/U-box superfamily protein (.1) AT4G12140 45 / 4e-06 RING/U-box superfamily protein (.1) AT5G37270 45 / 4e-06 RING/U-box superfamily protein (.1) AT1G18770 44 / 5e-06 RING/U-box superfamily protein (.1) AT5G37250 45 / 7e-06 RING/U-box superfamily protein (.1) AT1G28040 45 / 7e-06 RING/U-box superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10006279 [exp] 148 / 8e-45 AT1G18760 62 / 2e-11 Zinc finger, C3HC4 type (RING finger) family protein (.1) Lus10020558 [exp] 129 / 1e-38 AT1G18760 56 / 1e-10 Zinc finger, C3HC4 type (RING finger) family protein (.1) Lus10012376 [exp] 94 / 9e-25 AT3G46620 60 / 3e-11 zinc finger (C3HC4-type RING finger) family protein (.1) Lus10028009 [exp] 89 / 1e-22 AT5G59550 57 / 5e-10 zinc finger (C3HC4-type RING finger) family protein (.1) Lus10007628 [exp] 87 / 1e-20 AT4G12140 60 / 2e-10 RING/U-box superfamily protein (.1) Lus10033682 [exp] 69 / 1e-14 AT3G19950 67 / 5e-13 RING/U-box superfamily protein (.1) Lus10017722 [exp] 67 / 1e-13 AT3G19950 64 / 5e-12 RING/U-box superfamily protein (.1) Lus10030464 [exp] 52 / 2e-08 AT1G26800 181 / 3e-57 RING/U-box superfamily protein (.1) Lus10011392 [exp] 52 / 3e-08 AT5G59550 75 / 2e-15 zinc finger (C3HC4-type RING finger) family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G118000 [exp] 52 / 3e-08 AT1G18760 81 / 1e-18 Zinc finger, C3HC4 type (RING finger) family protein (.1) Potri.007G107000 [exp] 51 / 5e-08 AT1G18760 79 / 7e-18 Zinc finger, C3HC4 type (RING finger) family protein (.1) Potri.002G170300 [exp] 52 / 6e-08 AT2G46495 317 / 4e-106 RING/U-box superfamily protein (.1) Potri.013G116000 [exp] 49 / 5e-07 AT3G30460 61 / 2e-11 RING/U-box superfamily protein (.1) Potri.005G062400 [exp] 48 / 5e-07 AT1G60360 82 / 3e-18 RING/U-box superfamily protein (.1) Potri.019G086601 [exp] 48 / 6e-07 AT1G14200 60 / 3e-11 RING/U-box superfamily protein (.1) Potri.004G122000 [exp] 47 / 8e-07 AT1G26800 94 / 1e-24 RING/U-box superfamily protein (.1) Potri.014G098200 [exp] 47 / 1e-06 AT2G46495 290 / 1e-95 RING/U-box superfamily protein (.1) Potri.011G097100 [exp] 47 / 2e-06 AT1G53190 372 / 2e-123 RING/U-box superfamily protein (.1.2) Potri.002G083001 [exp] 47 / 2e-06 AT1G18760 81 / 1e-18 Zinc finger, C3HC4 type (RING finger) family protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10034793 pacid=23142304 polypeptide=Lus10034793 locus=Lus10034793.g ID=Lus10034793.BGIv1.0 annot-version=v1.0 ATGGAGGAGTGGTTTTCAATGCAGCAATGTCGCCGCCTCCCTGCGTTTCCCGATCGGCCGCCGTCGGCCGACGAACTTGGCCGCCACAATTCCACCGTCA AAACGTTGATCCGCATTCACTGCCGCCTTCCCGTGTTTCCTGATCTGCGACCCTTGGTGGAACACCCTACCACTAACAAGTTATTTTTGAAAATAGAACA ATGGGCAGAAACAGCGGTGATGATGCCACCTCCGCCGGGGGCGGGAAGGCAGAGGATACGAATCCGTCTTGTACGAGAAGAATTGCCTACAGAATTCGAG GCTGCGATGGCGGCTTCTGCCGATGAATACGATATGAGGACTACCGGCGTATCGGAATCTGCAATTGAAAAGCTGGAGAGGGTGGAGATCGGATCGAAGC AGGGCGATTGCTGCACTATTTTTCTTGAGGAGATGGGTTGCAGGGAAGGAAAGGTGATAAGGCTTGATTGCAAGCATGAATTCCACGAAAGTTGCTTGAT TTCGTGGCTTCGGAAATCGAATTGCTGCCCATTGGGCCGCTTTTAG
AA sequence Show only first row Show all	>Lus10034793 pacid=23142304 polypeptide=Lus10034793 locus=Lus10034793.g ID=Lus10034793.BGIv1.0 annot-version=v1.0 MEEWFSMQQCRRLPAFPDRPPSADELGRHNSTVKTLIRIHCRLPVFPDLRPLVEHPTTNKLFLKIEQWAETAVMMPPPPGAGRQRIRIRLVREELPTEFE AAMAASADEYDMRTTGVSESAIEKLERVEIGSKQGDCCTIFLEEMGCREGKVIRLDCKHEFHESCLISWLRKSNCCPLGRF

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G59550			zinc finger (C3HC4-type RING f...		Lus10034793 [exp]	0	1
AT3G50310		MKKK20, MAPKKK2...	MAPKK kinase 20, mitogen-activ...		Lus10034288 [exp]	9.2	0.7792
AT3G11670		DGD1	DIGALACTOSYL DIACYLGLYCEROL DE...		Lus10029403 [exp]	15.9	0.7135
AT5G66320	GATA	GATA5	GATA transcription factor 5 (....		Lus10028360 [exp]	24.8	0.7323
AT4G20900		TDM1, MS5	MALE-STERILE 5, Tetratricopept...		Lus10023256 [exp]	39.3	0.6912
AT4G32050			neurochondrin family protein (...		Lus10001536 [exp]	41.6	0.7135
AT3G55140			Pectin lyase-like superfamily ...		Lus10003307 [exp]	50.7	0.6958
AT4G02390		ATPARP1, APP	POLY\(ADP-RIBOSE\) POLYMERASE ...		Lus10007882 [exp]	63.3	0.6884
AT1G32200		ACT1, ATS1	ACYLTRANSFERASE 1, phospholipi...		Lus10000675 [exp]	63.7	0.7004
AT3G14470			NB-ARC domain-containing disea...		Lus10022351 [exp]	76.9	0.6986
AT1G78950		ATLUP3	Terpenoid cyclases family prot...		Lus10016438 [exp]	91.0	0.6552

Compare expression of checked genes

Lus10034793 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.