Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G20190 340 / 4e-110 Leucine-rich repeat protein kinase family protein (.1) AT1G50610 325 / 6e-104 Leucine-rich repeat protein kinase family protein (.1) AT4G31250 298 / 8e-94 Leucine-rich repeat protein kinase family protein (.1) AT2G07040 290 / 7e-91 ATPRK2A Leucine-rich repeat protein kinase family protein (.1) AT5G35390 282 / 1e-87 Leucine-rich repeat protein kinase family protein (.1) AT5G20690 206 / 3e-59 Leucine-rich repeat protein kinase family protein (.1) AT3G42880 201 / 2e-57 Leucine-rich repeat protein kinase family protein (.1) AT5G24100 194 / 4e-55 Leucine-rich repeat protein kinase family protein (.1) AT1G64210 192 / 1e-54 Leucine-rich repeat protein kinase family protein (.1) AT5G53320 175 / 3e-48 Leucine-rich repeat protein kinase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10033339 [exp] 805 / 0 AT3G20190 600 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10035710 [exp] 413 / 1e-140 AT3G20190 509 / 3e-175 Leucine-rich repeat protein kinase family protein (.1) Lus10037297 [exp] 390 / 6e-134 AT3G20190 420 / 3e-143 Leucine-rich repeat protein kinase family protein (.1) Lus10027597 [exp] 328 / 6e-105 AT5G35390 603 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10026988 [exp] 324 / 6e-104 AT4G31250 606 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10022946 [exp] 322 / 2e-102 AT5G35390 593 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10020183 [exp] 318 / 2e-101 AT4G31250 599 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10017144 [exp] 290 / 5e-90 AT5G35390 597 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10015678 [exp] 262 / 2e-80 AT1G72460 466 / 7e-157 Leucine-rich repeat protein kinase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G002000 [exp] 476 / 4e-163 AT3G20190 437 / 4e-145 Leucine-rich repeat protein kinase family protein (.1) Potri.014G002700 [exp] 453 / 3e-154 AT3G20190 415 / 1e-136 Leucine-rich repeat protein kinase family protein (.1) Potri.006G279300 [exp] 395 / 9e-132 AT4G31250 570 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.006G078600 [exp] 367 / 3e-120 AT5G35390 660 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.004G170274 [exp] 352 / 2e-118 AT3G20190 408 / 1e-137 Leucine-rich repeat protein kinase family protein (.1) Potri.018G002600 [exp] 337 / 4e-109 AT3G20190 540 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.018G147300 [exp] 303 / 1e-95 AT5G35390 629 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.006G139700 [exp] 204 / 7e-59 AT3G42880 611 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.003G020600 [exp] 192 / 3e-54 AT2G36570 293 / 6e-90 Leucine-rich repeat protein kinase family protein (.1) Potri.003G068800 [exp] 192 / 5e-54 AT3G42880 471 / 6e-159 Leucine-rich repeat protein kinase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF00069 [flax] [poplar] Pkinase Protein kinase domain CL0022 [flax] [poplar] LRR PF00560 [flax] [poplar] LRR_1 Leucine Rich Repeat
Representative CDS sequence Show only first row Show all	>Lus10034795 pacid=23142220 polypeptide=Lus10034795 locus=Lus10034795.g ID=Lus10034795.BGIv1.0 annot-version=v1.0 ATGGACAACAGGCTGGATGGTCCGTTGCCGGAGGTGAAGAAGCTTGGAAAACTGAAGTCGTTGTTCTTGTCGAACAATTACTTCTCTGGGGAGATTCCTG CAGGGGTGTTCAAAGTGATGGGGTCGCTGAAGACGCTGTACCTTGCGAATAATGATTTCACAGGGAGGATACCTGAGTCTATTACAACGCTGCCTAAGCT TACTGTGGTGAAGCTTGATGGAAATCAGTTTCAGGGTAGAATTCCTGAGTTTCAGCATAAGTTCCTGCGAGCTGTGAATTTGGCTAAAAATGATTTGGAA GGTCCTATTCCTAAGAGCCTCAGCCACATGAATTCCAGCTCCTTCTCAGAGAGAAAGACCAACTTGACACTAGGGATCAGCCTCATTCTCCTGTCGCTGG TAATCATACTCAAGATAATCATCCTATCTCTTCTGCTCCGCCGCCGCCGCCGAACCTGCCCGTCCTCCCCACCGGAGGTCATCACCCACGCCAAATCCAT GACTCCCACTGCCATGGAGACTGCCACGGTGGTTAAGCCGGTTCAACGGGAGTCAAAGACAAAGAAGATGGCGGTTGAACAGGTGAACCAGCTGATTTTC GTGAGGGACGACATCAAGGAGAGGTTCGAGCTGCAGGATTTGCTGAGGGCGTCGGCCGAGGTGTTGGGGAGCGGGACGTTTGGGGCGTCGTACAAGGCAG GGGTGATTGGCCAGCCGGCGATGGTGGTGAAGAGGTATCGGCATATGAACGACGTTGGAAGGGAGGAGTTCCATGACCACATGAGGAGGATTGGGAAGTT GGATCATCCTAACTTACTCCCACTCGTGGCTTGTTACTATAGGAAGGAGGAGAAGCTTTTGGTGTCTAAGTTTGTGAGTAATGGGAGCTTGGCTACCCGT CTCCATGGAATAGCAAAGGGCTTAGAACATCTCCACAATGAGCTCCTCATAACCACCCCTCACGCCCACTTGAAATCCTCAAACGTCCTTCTCGACGATG ACTCCTTTGAGCCCATGCTGACGGATTACGGGATACAACCCATGATCAGCGCGGACCTCGCACGCAAGCTGACGATCGCTTACAAGTCCCCGGAGCATGC TCAACACGGCCGGACGTGGGGGAAGACGAACGTGTGGAACCTAGGGATAGTGATGCTAGAGATACTGACCGGGAAGTACCCTGAGAACTACATAACACAA GGGTACGACAGTAATTTGGACCTGGCGACGTGGGTGAACAACATGGTAAAGGACAAGAAGATGGGCGAGGTGTTCGATAAGGACATGGTTGGGACATCCA AGGGTGAGATGATTAAGGTTTTGAAGTTGGCTTTGAGTTGTTGTGAAGAGGATGTGGAGAGAAGGGTGGATATTAAGGAAGTTGTTGAGAAGATCGAACG TTTTATTGATGGCCATGATAGTGGAAATGAACAATAA
AA sequence Show only first row Show all	>Lus10034795 pacid=23142220 polypeptide=Lus10034795 locus=Lus10034795.g ID=Lus10034795.BGIv1.0 annot-version=v1.0 MDNRLDGPLPEVKKLGKLKSLFLSNNYFSGEIPAGVFKVMGSLKTLYLANNDFTGRIPESITTLPKLTVVKLDGNQFQGRIPEFQHKFLRAVNLAKNDLE GPIPKSLSHMNSSSFSERKTNLTLGISLILLSLVIILKIIILSLLLRRRRRTCPSSPPEVITHAKSMTPTAMETATVVKPVQRESKTKKMAVEQVNQLIF VRDDIKERFELQDLLRASAEVLGSGTFGASYKAGVIGQPAMVVKRYRHMNDVGREEFHDHMRRIGKLDHPNLLPLVACYYRKEEKLLVSKFVSNGSLATR LHGIAKGLEHLHNELLITTPHAHLKSSNVLLDDDSFEPMLTDYGIQPMISADLARKLTIAYKSPEHAQHGRTWGKTNVWNLGIVMLEILTGKYPENYITQ GYDSNLDLATWVNNMVKDKKMGEVFDKDMVGTSKGEMIKVLKLALSCCEEDVERRVDIKEVVEKIERFIDGHDSGNEQ

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G20190			Leucine-rich repeat protein ki...		Lus10034795 [exp]	0	1
AT1G11940			Core-2/I-branching beta-1,6-N-...		Lus10030027 [exp]	4.4	0.7288
AT4G37030			unknown protein		Lus10001003 [exp]	7.9	0.6300
					Lus10027680 [exp]	9.4	0.6907
AT1G47710			Serine protease inhibitor (SER...		Lus10040926 [exp]	11.6	0.6625
AT5G03100			F-box/RNI-like superfamily pro...		Lus10029952 [exp]	14.3	0.6613
AT1G06770		DRIP1	DREB2A-interacting protein 1 (...		Lus10042532 [exp]	21.4	0.6356
AT1G20330		FRL1, CVP1, SMT...	FRILL1, COTYLEDON VASCULAR PAT...		Lus10004158 [exp]	22.6	0.6356
AT2G30210		LAC3	laccase 3 (.1)		Lus10026400 [exp]	22.8	0.6473
					Lus10040014 [exp]	23.9	0.6356
					Lus10000984 [exp]	25.0	0.6356

Compare expression of checked genes

Lus10034795 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.