Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G34260 392 / 6e-137 WDR55 human WDR55 \(WD40 repeat\) homolog, transducin family protein / WD-40 repeat family protein (.1.2) AT2G43770 58 / 2e-09 Transducin/WD40 repeat-like superfamily protein (.1) AT3G49660 52 / 2e-07 AtWDR5a human WDR5 \(WD40 repeat\) homolog a, Transducin/WD40 repeat-like superfamily protein (.1) AT2G21390 49 / 5e-06 Coatomer, alpha subunit (.1) AT1G62020 46 / 3e-05 Coatomer, alpha subunit (.1) AT3G05090 43 / 0.0003 LRS1 LATERAL ROOT STIMULATOR 1, Transducin/WD40 repeat-like superfamily protein (.1.2) AT5G25150 43 / 0.0003 TAF5 TBP-associated factor 5 (.1) AT4G02730 42 / 0.0004 AtWDR5b human WDR5 \(WD40 repeat\) homolog b, Transducin/WD40 repeat-like superfamily protein (.1) AT3G18140 42 / 0.0004 Transducin/WD40 repeat-like superfamily protein (.1.2) AT1G15440 42 / 0.0006 ATPWP2 \(PERIODIC TRYPTOPHAN PROTEIN 2, periodic tryptophan protein 2 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10033342 [exp] 554 / 0 AT2G34260 454 / 2e-160 human WDR55 \(WD40 repeat\) homolog, transducin family protein / WD-40 repeat family protein (.1.2) Lus10012230 [exp] 58 / 2e-09 AT2G43770 620 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Lus10002860 [exp] 57 / 6e-09 AT2G43770 617 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Lus10003487 [exp] 49 / 3e-06 AT3G49660 489 / 6e-176 human WDR5 \(WD40 repeat\) homolog a, Transducin/WD40 repeat-like superfamily protein (.1) Lus10039636 [exp] 47 / 2e-05 AT3G49660 502 / 0.0 human WDR5 \(WD40 repeat\) homolog a, Transducin/WD40 repeat-like superfamily protein (.1) Lus10021059 [exp] 45 / 7e-05 AT2G41500 706 / 0.0 LACHESIS, WD-40 repeat family protein / small nuclear ribonucleoprotein Prp4p-related (.1) Lus10004167 [exp] 44 / 0.0001 AT2G41500 708 / 0.0 LACHESIS, WD-40 repeat family protein / small nuclear ribonucleoprotein Prp4p-related (.1) Lus10040490 [exp] 44 / 0.0002 AT3G18860 1103 / 0.0 transducin family protein / WD-40 repeat family protein (.1.2) Lus10004142 [exp] 44 / 0.0002 AT3G05090 1091 / 0.0 LATERAL ROOT STIMULATOR 1, Transducin/WD40 repeat-like superfamily protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G095000 [exp] 450 / 8e-160 AT2G34260 442 / 3e-156 human WDR55 \(WD40 repeat\) homolog, transducin family protein / WD-40 repeat family protein (.1.2) Potri.017G120100 [exp] 431 / 3e-152 AT2G34260 432 / 2e-152 human WDR55 \(WD40 repeat\) homolog, transducin family protein / WD-40 repeat family protein (.1.2) Potri.T125104 [exp] 46 / 3e-05 AT3G18860 1114 / 0.0 transducin family protein / WD-40 repeat family protein (.1.2) Potri.009G112184 [exp] 46 / 3e-05 AT3G18860 1128 / 0.0 transducin family protein / WD-40 repeat family protein (.1.2) Potri.005G148500 [exp] 45 / 3e-05 AT3G49660 503 / 0.0 human WDR5 \(WD40 repeat\) homolog a, Transducin/WD40 repeat-like superfamily protein (.1) Potri.007G009500 [exp] 44 / 7e-05 AT3G49660 469 / 4e-168 human WDR5 \(WD40 repeat\) homolog a, Transducin/WD40 repeat-like superfamily protein (.1) Potri.003G060500 [exp] 44 / 0.0001 AT1G15440 1349 / 0.0 \(PERIODIC TRYPTOPHAN PROTEIN 2, periodic tryptophan protein 2 (.1.2) Potri.004G150700 [exp] 43 / 0.0002 AT3G18860 1099 / 0.0 transducin family protein / WD-40 repeat family protein (.1.2) Potri.001G410500 [exp] 42 / 0.0003 AT5G54520 510 / 5e-180 Transducin/WD40 repeat-like superfamily protein (.1) Potri.012G060800 [exp] 42 / 0.0005 AT1G49040 1782 / 0.0 STOMATAL CYTOKINESIS-DEFECTIVE 1, stomatal cytokinesis defective / SCD1 protein (SCD1) (.1), stomatal cytokinesis defective / SCD1 protein (SCD1) (.2), stomatal cytokinesis defective / SCD1 protein (SCD1) (.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0186 [flax] [poplar] Beta_propeller PF00400 [flax] [poplar] WD40 WD domain, G-beta repeat
Representative CDS sequence Show only first row Show all	>Lus10034796 pacid=23142302 polypeptide=Lus10034796 locus=Lus10034796.g ID=Lus10034796.BGIv1.0 annot-version=v1.0 ATGGAAATTGATTTAGGGAAAACTCCGTTTAGTATGGACTTCCATCCTTCTGATCACTTGGTTGCCACTGCCCTTATCACCGGAGACCTCCAAATATACC GTTATGGGACTGACTCCACTTCACAAAAGCTGCTAGAAGTCAAGGCACACACTGAATCCTGTAGAGCTGTTCGATTTATCAATGGTGGACAAGCAATCAT AACAGGGTCTAGCGACTGCTCTATCTTGGCAACGGATGTTGAAACTGGAGCAGCAATTGCTCGTCTGGAAAACGCTCATGAGGATGCAATCTTTAGTTTG ATTAACCTCACAGAATCAACTATTGCGACAGGAGATGATCAAGGCTGCATGAAGGTATGGGACACTAGGCAACGCACTTGCTGCAATACGTTTGCTGCTC ACGAGGACTATGTTTCTGATATGACTTATGTCCAAACCCGGTCTGAGTTCTCAGAAGAAGAGTTGTTATCTGTGGTTGTCATGAAGAATGGGCGGAAGGT TATTTGTGGCTCCCAAGCAGGAACACTGTTATTATATTCCTGGGGTTTCTTCAAGGACTGCAGTGATCGTTTTCTTGGTCTATCTTCAAATTCAATTGAT TCTATGTTGAAGCTGGATGAAGATAGACTAATTGCTGGATGCGAGAATGGACTTATCAGTTTGGTTGGTATATTGCCCAATAGAGTTATCCAACCACTAG CTGAGCACTCAGAGTATCCTATTGAGCACCTGGCATTTTCACACGACAGAAAATTCCTGGGCAGTATCTCTCACGATCAAATTCTGAAGCTATGGGATAT GGAAGAGTTGTTGGAAAAAGTGGAGACGAATGGTACTGAAGCGCGGGAGGGGAATGCGTCTGAAGATGACAGTGACGGGATGGATTTGGATATGAATCCT GCCAAGTCTAAGAAAGGGACCAAGAAGAAAAATGGACAGAACAATAGTAACAGCAGCAGCACTAGTTTCTTCGCTGACCTGTAG
AA sequence Show only first row Show all	>Lus10034796 pacid=23142302 polypeptide=Lus10034796 locus=Lus10034796.g ID=Lus10034796.BGIv1.0 annot-version=v1.0 MEIDLGKTPFSMDFHPSDHLVATALITGDLQIYRYGTDSTSQKLLEVKAHTESCRAVRFINGGQAIITGSSDCSILATDVETGAAIARLENAHEDAIFSL INLTESTIATGDDQGCMKVWDTRQRTCCNTFAAHEDYVSDMTYVQTRSEFSEEELLSVVVMKNGRKVICGSQAGTLLLYSWGFFKDCSDRFLGLSSNSID SMLKLDEDRLIAGCENGLISLVGILPNRVIQPLAEHSEYPIEHLAFSHDRKFLGSISHDQILKLWDMEELLEKVETNGTEAREGNASEDDSDGMDLDMNP AKSKKGTKKKNGQNNSNSSSTSFFADL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G34260		WDR55	human WDR55 \(WD40 repeat\) ho...		Lus10034796 [exp]	0	1
AT2G26830		EMB1187	embryo defective 1187, Protein...		Lus10019424 [exp]	3.2	0.9004
AT2G34260		WDR55	human WDR55 \(WD40 repeat\) ho...		Lus10033342 [exp]	4.2	0.8764
AT2G11000		ATMAK10	MAK10 homologue (.1.2)		Lus10038121 [exp]	11.3	0.8607
AT2G04790			unknown protein		Lus10006402 [exp]	12.2	0.8853
AT3G01280		VDAC1, ATVDAC1	ARABIDOPSIS THALIANA VOLTAGE D...		Lus10007267 [exp]	12.4	0.8944
AT1G25350		OVA9	ovule abortion 9, glutamine-tR...		Lus10041433 [exp]	14.5	0.8701
AT2G33820		ATMBAC1	Mitochondrial substrate carrie...		Lus10015420 [exp]	14.7	0.8283
AT4G26900		HISN4, HISHF, A...	HIS HF (.1)		Lus10032635 [exp]	15.2	0.8762
AT3G21820		SDG36, ATXR2	SET DOMAIN PROTEIN 36, histone...		Lus10015102 [exp]	15.3	0.8880
AT3G01130			unknown protein		Lus10042059 [exp]	17.1	0.8675

Compare expression of checked genes

Lus10034796 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.