Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G78920 1264 / 0 AtVHP2;1, AVPL1, AVP2 vacuolar H+-pyrophosphatase 2, VACUOLAR-PYROPHOSPHATASE LIKE PROTEIN 1, vacuolar H+-pyrophosphatase 2, vacuolar H+-pyrophosphatase 2 (.1), vacuolar H+-pyrophosphatase 2 (.2) AT1G16780 1259 / 0 AtVHP2;2, AVPL1 Inorganic H pyrophosphatase family protein (.1) AT1G15690 390 / 5e-124 FUGU5, AtVHP1;1, AVP-3, ATAVP3, AVP1 FUGU 5, ARABIDOPSIS THALIANA V-PPASE 3, Inorganic H pyrophosphatase family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10033345 [exp] 1137 / 0 AT1G16780 1174 / 0.0 Inorganic H pyrophosphatase family protein (.1) Lus10038111 [exp] 405 / 1e-129 AT1G15690 1385 / 0.0 FUGU 5, ARABIDOPSIS THALIANA V-PPASE 3, Inorganic H pyrophosphatase family protein (.1.2) Lus10039977 [exp] 397 / 2e-126 AT1G15690 1381 / 0.0 FUGU 5, ARABIDOPSIS THALIANA V-PPASE 3, Inorganic H pyrophosphatase family protein (.1.2) Lus10038114 [exp] 391 / 5e-126 AT1G15690 1170 / 0.0 FUGU 5, ARABIDOPSIS THALIANA V-PPASE 3, Inorganic H pyrophosphatase family protein (.1.2) Lus10008828 [exp] 281 / 8e-84 AT1G15690 697 / 0.0 FUGU 5, ARABIDOPSIS THALIANA V-PPASE 3, Inorganic H pyrophosphatase family protein (.1.2) Lus10008044 [exp] 253 / 1e-75 AT1G15690 561 / 0.0 FUGU 5, ARABIDOPSIS THALIANA V-PPASE 3, Inorganic H pyrophosphatase family protein (.1.2) Lus10008042 [exp] 197 / 2e-52 AT1G15690 422 / 1e-134 FUGU 5, ARABIDOPSIS THALIANA V-PPASE 3, Inorganic H pyrophosphatase family protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G254200 [exp] 1268 / 0 AT1G16780 1266 / 0.0 Inorganic H pyrophosphatase family protein (.1) Potri.008G003502 [exp] 429 / 1e-145 AT1G16780 477 / 3e-164 Inorganic H pyrophosphatase family protein (.1) Potri.006G063000 [exp] 398 / 7e-127 AT1G15690 1336 / 0.0 FUGU 5, ARABIDOPSIS THALIANA V-PPASE 3, Inorganic H pyrophosphatase family protein (.1.2) Potri.005G018700 [exp] 395 / 4e-126 AT1G15690 1248 / 0.0 FUGU 5, ARABIDOPSIS THALIANA V-PPASE 3, Inorganic H pyrophosphatase family protein (.1.2) Potri.013G009400 [exp] 392 / 6e-125 AT1G15690 1237 / 0.0 FUGU 5, ARABIDOPSIS THALIANA V-PPASE 3, Inorganic H pyrophosphatase family protein (.1.2) Potri.018G119500 [exp] 391 / 4e-124 AT1G15690 1367 / 0.0 FUGU 5, ARABIDOPSIS THALIANA V-PPASE 3, Inorganic H pyrophosphatase family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03030 [flax] [poplar] H_PPase Inorganic H+ pyrophosphatase
Representative CDS sequence Show only first row Show all	>Lus10034800 pacid=23142237 polypeptide=Lus10034800 locus=Lus10034800.g ID=Lus10034800.BGIv1.0 annot-version=v1.0 ATGATGGGGGAGGATGTTGAGGGTGGTAACTTGGGGTCATATGCTGAAAGGCCACGGACTTTCCCCAATATGCGAAATAAAGCTTATACTCCACTGGTCT TTCGGATTCTTATGGGGATTAATGTCCGTGTTCTATTTATACTTTTGTTATTGGCCTTCTCGGTGGTTTTTTACATTGGAGCAAGCACTTCTGGAATCAT TGTGTTTGTTTTCACAGTGTGTATCATTAGCTTCCTTCTATCAGTTTATCTTACCAAGTGGGTACTCTCGAAGGACGAGGGACCTCCTGAAATGGCTCAG ATATCAGATGCCATACGTGAAGGAGCAGAAGGCTTCTTTAGGACACAGTATGGAACTATATCTAAGATGGCAATGTTACTTGCACTAGTGATCCTATGCA TTTATTTGTTCCGCAGCACAACTCCTGAACAAGAAGCTTCTGGCGTAGGGAGATCCGTAACCGCATACATCACTGTTGCTTCATTCCTTTTAGGAGCTCT GTGTTCAGGTGTTGCTGGTTATGTTGGGATGTGGGTCTCAGTTCGTGCAAATGTAAGGGTGTCTAGTGCTGCAAGACGGTCAGCAAGAGAGGCACTGCAG ATAGCTGTTCGTGCTGGTGGTTGTTCTGCTATGGTGGTTGTTGGAATGGCTGTAATAGGAATAGCCATCCTTTATTCTACTTTCTATGTCTGGTTGGGAG TGGATTCCCCTGGTTCGATGAAGGTTACAGAATTGCCCCTTCTGCTAGTCGGGTATGGTTTTGGAGCCTCCTTTGTTGCTCTCTTTGCCCAATTAGGTGG TGGAATATACACAAAGGCTGCTGATGTTGGGGCTGATCTTGTCGGGAAAGTGGAGCAAGGAATACCTGAAGATGATCCTAGGAACCCTGCAGTCATTGCT GATTTGGTCGGAGACAATGTTGGAGATTGTGCTGCTCGAGGTGCTGATCTGTTTGAAAGCATAGCCGCTGAAATAATTAGTGCCATGATACTTGGTGGAA CAATGGCAAAGCGTTGCAAACTTGAAAATCCATCTGGCTTCATCTTATTTCCTCTTGTTGTTCATTCCTTTGATCTGGTTATATCTTCTATTGGAGTACT TTCAATTAGGAGCAGTCGCAGCTCAGGTTTGAAGTCTGTTATTGAAGATCCAATGGCAATTCTTCAGAAAGGATACTCTGTTACAGTAATCTTGGCTGTT CTTACATTTGGTGCGTCAACCCGTTGGATGCTGTACACTGAGCAAGCACCTTCAGCTTGGTTTAACTTTGCCTTGTGTGGATTGGTTGGCATTATCACTG CCTATGTGTTTGTCTGGATCACCAAGTATTATACTGACTACAAATATGAGCCTGTACGGTCATTAGCTTTGGCCAGTTCCACAGGCCATGGCACTAATAT AATTGCAGGAGTTAGTTTGGGTCTAGAATCAACAGCTCTTCCTGTTCTGGTCATCAGTGTATCAATTGTGTCAGCCTTTTGGCTTGGTCGCACCTCAGGT CTGGTAGATGAATCTGGAAACCCTGCTGGTGGGTTGTTCGGTACAGCTGTGGCAACAATGGGAATGCTTAGCACTGCTGGTTATGTATTAACCATGGATA TGTTTGGCCCTATAGCTGACAATGCTGGTGGCATTGTGGAGATGAGTCAGCAGCCAGAAAGTGTTCGAGAAATCACTGATGTGTTAGATGCTGTTGGAAA TACTACAAAAGCTACAACGAAAGGATTTGCCATTGGATCGGCTGCTCTTGCATCTTTCCTTTTGTTTAGTGCTTATATGGATGAGGTTTCTACATTTGCT GAAGAACCTTTGAAACAGGTTGACATAGCCATCCCCGAAGTTTTTGTTGGAGGATTGTTGGGGTCAATGCTTATTTACTTGTTTAGTGCATGGGCTTGTT CAGCGGTTGGTCGAACTGCTCAGGAGGTTGTTAATGAAGTCAGAAGGCAGTTTATCGAGAGACCAGGAATCATGGAGTACACGGAAAAGCCAGATTATGG CCGCTGTGTTGCAATTGTGGCATCTGCATCTTTGAGAGAAATGATAAAACCTGGTGCTTTGGCTATTATATCTCCTATGGTAGTGGGGATTGTGTTCCGG ATCCTAGGGTACTACACGGGGCAGCCACTTCTAGGAGCAAAGGTTGTGGCAGCAATGCTGATGTTTGCAACAGTGTCTGGTATTCTGATGGCTCTATTCC TCAACACAGCTGGTGGTGCATGGGACAACGCCAAGAAGTACATCGAGACAGGAGTTCTTGGAGGTAAAGGGAGTGAGTGCCACAAGGCTGCAATTACAGG GGACACTGTGGGAGATCCTTTTAAAGACACAGCAGGGCCGTCGATTCACGTCCTCATAAAAATGTTGGCGACGATAACGCTAGTCATGGCTCCCATCTTT CTTGAAGGAAAGAGTGTGGGTTGA
AA sequence Show only first row Show all	>Lus10034800 pacid=23142237 polypeptide=Lus10034800 locus=Lus10034800.g ID=Lus10034800.BGIv1.0 annot-version=v1.0 MMGEDVEGGNLGSYAERPRTFPNMRNKAYTPLVFRILMGINVRVLFILLLLAFSVVFYIGASTSGIIVFVFTVCIISFLLSVYLTKWVLSKDEGPPEMAQ ISDAIREGAEGFFRTQYGTISKMAMLLALVILCIYLFRSTTPEQEASGVGRSVTAYITVASFLLGALCSGVAGYVGMWVSVRANVRVSSAARRSAREALQ IAVRAGGCSAMVVVGMAVIGIAILYSTFYVWLGVDSPGSMKVTELPLLLVGYGFGASFVALFAQLGGGIYTKAADVGADLVGKVEQGIPEDDPRNPAVIA DLVGDNVGDCAARGADLFESIAAEIISAMILGGTMAKRCKLENPSGFILFPLVVHSFDLVISSIGVLSIRSSRSSGLKSVIEDPMAILQKGYSVTVILAV LTFGASTRWMLYTEQAPSAWFNFALCGLVGIITAYVFVWITKYYTDYKYEPVRSLALASSTGHGTNIIAGVSLGLESTALPVLVISVSIVSAFWLGRTSG LVDESGNPAGGLFGTAVATMGMLSTAGYVLTMDMFGPIADNAGGIVEMSQQPESVREITDVLDAVGNTTKATTKGFAIGSAALASFLLFSAYMDEVSTFA EEPLKQVDIAIPEVFVGGLLGSMLIYLFSAWACSAVGRTAQEVVNEVRRQFIERPGIMEYTEKPDYGRCVAIVASASLREMIKPGALAIISPMVVGIVFR ILGYYTGQPLLGAKVVAAMLMFATVSGILMALFLNTAGGAWDNAKKYIETGVLGGKGSECHKAAITGDTVGDPFKDTAGPSIHVLIKMLATITLVMAPIF LEGKSVG

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G16780		AtVHP2;2, AVPL1	Inorganic H pyrophosphatase fa...		Lus10034800 [exp]	0	1
AT1G10950		AtTMN1	transmembrane nine 1 (.1)		Lus10012697 [exp]	5.5	0.9066
AT3G25800		PP2AA2, PR65, P...	protein phosphatase 2A subuni...		Lus10041472 [exp]	11.0	0.8787
AT2G41490		GPT	UDP-glcnac-adolichol phosphate...		Lus10012300 [exp]	12.0	0.8879
AT5G11040		AtTRS120	TRS120 (.1)		Lus10008127 [exp]	12.4	0.8784
AT1G71070			Core-2/I-branching beta-1,6-N-...		Lus10012710 [exp]	17.7	0.8756
AT5G40830		ATRAD3, ATATR	S-adenosyl-L-methionine-depend...		Lus10012158 [exp]	19.3	0.8971
AT1G70770			Protein of unknown function DU...		Lus10003709 [exp]	19.7	0.8952
AT3G52450		PUB22	plant U-box 22 (.1)		Lus10004096 [exp]	20.2	0.8316
AT1G78240		OSU1, TSD2, QUA...	TUMOROUS SHOOT DEVELOPMENT 2, ...		Lus10010353 [exp]	23.0	0.8566
AT4G24840			unknown protein		Lus10009908 [exp]	26.5	0.8635

Compare expression of checked genes

Lus10034800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.