Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G16790 132 / 4e-40 ribosomal protein-related (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10033346 [exp] 249 / 1e-86 AT1G16790 142 / 2e-44 ribosomal protein-related (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G254100 [exp] 160 / 3e-51 AT1G16790 155 / 1e-49 ribosomal protein-related (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10034801 pacid=23142157 polypeptide=Lus10034801 locus=Lus10034801.g ID=Lus10034801.BGIv1.0 annot-version=v1.0 ATGCAACAACCGGCACCCCCTAATTCAGTCCGGCCAAACGAAGGCGGAGGCGGCAAGCCTTCGACGAGGAGGAAGCCGCCAACTCCCAAGGAGCTGATAT CTCACTACGAGTCTCAGGGGATGGAGCCCCAAGAGGCGTCCGCCAAGGTAATCGAAGACCTCCAAAAGGTTCTATACAGGGTTGTCTCGGCCAACAGCAA GGGCAAAAAGAAAGACAAGGCTTCGTCGGAGGTTTCCCGGAAGATTGACGTGGTGAACAACAGAGTGGCGGTGCTGGACATGAAGGTGGAGTCCAAGCCT GGCTACCTCGGAGTTTTCACCGTCGGAATCGCTTCTGGTGTGGCTCTGCGAGGGATCGAGAAGGTTTTGCCCAATGTTTGGGAAGGGATTGCACAAATTT GGAGCGCTGTTAGGAATGTCACCACCAAGCCTCCATCTTCGCGATGA
AA sequence Show only first row Show all	>Lus10034801 pacid=23142157 polypeptide=Lus10034801 locus=Lus10034801.g ID=Lus10034801.BGIv1.0 annot-version=v1.0 MQQPAPPNSVRPNEGGGGKPSTRRKPPTPKELISHYESQGMEPQEASAKVIEDLQKVLYRVVSANSKGKKKDKASSEVSRKIDVVNNRVAVLDMKVESKP GYLGVFTVGIASGVALRGIEKVLPNVWEGIAQIWSAVRNVTTKPPSSR

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G16790			ribosomal protein-related (.1)		Lus10034801 [exp]	0	1
AT3G44620			protein tyrosine phosphatases;...		Lus10019533 [exp]	3.6	0.8338
AT1G69200		FLN2	fructokinase-like 2 (.1)		Lus10036920 [exp]	5.9	0.8145
AT5G18380			Ribosomal protein S5 domain 2-...		Lus10012599 [exp]	7.2	0.8313
AT5G41270			unknown protein		Lus10035306 [exp]	9.7	0.8257
AT1G71920		HISN6B	HISTIDINE BIOSYNTHESIS 6B (.1....		Lus10005564 [exp]	11.5	0.8292
AT1G73940			unknown protein		Lus10010150 [exp]	17.7	0.7861
AT1G80560		ATIMD2	ARABIDOPSIS ISOPROPYLMALATE DE...		Lus10030344 [exp]	20.6	0.8014
AT1G16790			ribosomal protein-related (.1)		Lus10033346 [exp]	23.6	0.8273
AT3G07590			Small nuclear ribonucleoprotei...		Lus10025186 [exp]	26.1	0.7948
AT5G13120		Pnsl5, ATCYP20-...	Photosynthetic NDH subcomplex...		Lus10011330 [exp]	26.1	0.8056

Compare expression of checked genes

Lus10034801 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.