Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G78915 385 / 5e-132 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2), Tetratricopeptide repeat (TPR)-like superfamily protein (.3) AT2G37400 42 / 0.0005 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT4G39470 42 / 0.0008 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G003800 [exp] 454 / 1e-158 AT1G78915 448 / 3e-157 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2), Tetratricopeptide repeat (TPR)-like superfamily protein (.3) Potri.005G085700 [exp] 47 / 1e-05 AT4G39470 296 / 7e-99 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.016G080000 [exp] 42 / 0.0005 AT2G37400 342 / 4e-117 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.007G079200 [exp] 42 / 0.0006 AT4G39470 314 / 5e-106 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10034802 pacid=23142187 polypeptide=Lus10034802 locus=Lus10034802.g ID=Lus10034802.BGIv1.0 annot-version=v1.0 ATGTCAATGGCCATTGCTGCAACTGCGACCACCGCAATCCTAAGCAGCGGCCGTGGTGGTGGCTACCTAAGGAGTGGCAGCAGTACTGCCTTCGTCAGTT TCCAAGTTCGCTGCGCTGATTCCAATCAAAACCGCGGATTCGGTCCCTCTAACAAAGGCAACAAGGCACTTACATCCTCAATATTGTGCCTCTCCAGACG AGAAAGGCTCAAAGAGACCGCCAAGGTAATTAGGTGCTCTTTTAGCTGCAAAATTGATACAAGCTGGAATTTCTGGTTGAAATCAAATAAGCAATCTTCC TCTTTGCCGACACAGGCACCTGGTTTAAGTGCTCGATTCGATGCGAAGCCTAAAGGTAGTACCGCAGATCTTGAGTTTGAGCAACGGTTGCAAGCTGTTA AAAGGTCGGCACTTGAACAGAAAAAGGCTGTCAAGGTCAAAGAATTTGGACCAATTGACTATGATGCACCAGTTGAATCCAAAAAACCCACGATAGGAAC TGGTACTAAGATTGGAGTAGGAGTGGCTGTTGTGGTGTTCGGTTTGGTTTTTGCTTTTGGAGATTTGCTTCCAACAGGAAATGAAAGTACCAATGAGGAA GCCATGGTAGTCAATAAGAAGTTGCCCGATGAAGAGAAAGCTGCTCTTGAGAACAGATTGAAACAGTACGAGTCTACACTCAGCATCTCCCCGAAAGATC CGATTGCACTTGAAGGAGCTGCTGTAACCTTGGCCGAGTTGGGAGAATATACTAGGGCTGCCTCTTTGTTACAAGATTTGGCTAAGGCAAAGCCAGATGA TCCGGAAGTATTTCGTTTGATTGGAGAAGTTAAATATGAACTTAAAGACTATGAAGGGAGTGCTGTTGCGTATAGGACTTCTGCAAAGGTCTCCAAGAGC ACAAATTTTGAAGTTCTACGTGGAATTACTAATGCACTCCTAGCTTCAAAGAAACCAGATGAGGCTGTTCAATTCCTTTTGGCCTCTCGAGAGAGCCTCG ACTCTGAGAAGTCGAATGCTGCTGAAGTTCTGAAAACCGACGATGGAACGGCCGAGGATCAACCAGAAAAGGTGGACCCTATCCAGGTTGATCTCCTACT TGGGAAAGCGTATTCGGGCTGGGGCCATATCAGTGATGCTGTAGCAGTCTATGATAATCTCATCTCCAGCCACCCTAATGACTTCAGGGGCTACTTGGCA AAGGGAATAATATTGAAGGAGAATGGGAACCCAGGAGATGCTGAAAGGATGTTCATACAAGCACGTTTCCTTGCACCAGATAAAGCCAAAGCCTTTGTAG ACCGTTATGCCAGGAAATGA
AA sequence Show only first row Show all	>Lus10034802 pacid=23142187 polypeptide=Lus10034802 locus=Lus10034802.g ID=Lus10034802.BGIv1.0 annot-version=v1.0 MSMAIAATATTAILSSGRGGGYLRSGSSTAFVSFQVRCADSNQNRGFGPSNKGNKALTSSILCLSRRERLKETAKVIRCSFSCKIDTSWNFWLKSNKQSS SLPTQAPGLSARFDAKPKGSTADLEFEQRLQAVKRSALEQKKAVKVKEFGPIDYDAPVESKKPTIGTGTKIGVGVAVVVFGLVFAFGDLLPTGNESTNEE AMVVNKKLPDEEKAALENRLKQYESTLSISPKDPIALEGAAVTLAELGEYTRAASLLQDLAKAKPDDPEVFRLIGEVKYELKDYEGSAVAYRTSAKVSKS TNFEVLRGITNALLASKKPDEAVQFLLASRESLDSEKSNAAEVLKTDDGTAEDQPEKVDPIQVDLLLGKAYSGWGHISDAVAVYDNLISSHPNDFRGYLA KGIILKENGNPGDAERMFIQARFLAPDKAKAFVDRYARK

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G78915			Tetratricopeptide repeat (TPR)...		Lus10034802 [exp]	0	1
AT1G32070		ATNSI	nuclear shuttle interacting (....		Lus10035604 [exp]	2.0	0.8890
AT1G27510			Protein of unknown function (D...		Lus10002370 [exp]	4.0	0.8795
AT5G25800			Polynucleotidyl transferase, r...		Lus10028637 [exp]	4.2	0.8726
AT1G56310			Polynucleotidyl transferase, r...		Lus10031403 [exp]	4.6	0.7991
AT1G27150			Tetratricopeptide repeat (TPR)...		Lus10036690 [exp]	5.3	0.8614
AT4G27340			Met-10+ like family protein (....		Lus10037871 [exp]	5.7	0.8237
AT1G58280			Phosphoglycerate mutase family...		Lus10032821 [exp]	6.8	0.7961
AT5G25800			Polynucleotidyl transferase, r...		Lus10018935 [exp]	6.9	0.8457
AT4G30080	ARF	ARF16	auxin response factor 16 (.1)		Lus10040403 [exp]	7.4	0.7618
AT5G45780			Leucine-rich repeat protein ki...		Lus10007292 [exp]	7.5	0.8041

Compare expression of checked genes

Lus10034802 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.