Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G64270 1871 / 0 splicing factor, putative (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10033347 [exp] 2103 / 0 AT5G64270 2168 / 0.0 splicing factor, putative (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G050800 [exp] 1919 / 0 AT5G64270 2020 / 0.0 splicing factor, putative (.1) Potri.001G310900 [exp] 1901 / 0 AT5G64270 2001 / 0.0 splicing factor, putative (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0462 [flax] [poplar] TPA-repeat PF08920 [flax] [poplar] SF3b1 Splicing factor 3B subunit 1 CL0020 [flax] [poplar] TPR PF02985 [flax] [poplar] HEAT HEAT repeat
Representative CDS sequence Show only first row Show all	>Lus10034803 pacid=23142281 polypeptide=Lus10034803 locus=Lus10034803.g ID=Lus10034803.BGIv1.0 annot-version=v1.0 ATGGATCCAGAGATAGCTAAGACGCAGGAGGAGAGGAAGAGGATGGAGCAGGAGCTCGCCTCCCTCACTTCTCTCAACTACGATAAGGACCTCTACGGAG GAACTGACAAGGACTCCTACGTCACCTCCATCCCCGTCAACGACGACGAAGACAACGACATCGCCGACAATGAAGTCGCTCGCAAGCTCGCCTCCTATAC CGCTCCCAAGTCGCTTCTCAAGGAGATGCCTCGCGGCGGCGATGACGATGATGACGGCGGTTTCAAGAAGCCTTCCAGGATTATCGACCGCGAGGATGAT TACCGGCGCAGGAGACTGAATAGGGTGATATCTCCGGACAGACATGATGCGTTTGCGATGGGAGAGAAGACGCCGGATCCGTCGGTTAGGACTTACGCGG AAGTTATGAGGGAGGAGGCTCTGAAGAGGGAGAGAGAGGCCACGTTGAGGGAAATTTCGAAGAAGAAGAAGCAGGAGGAGGAAGATGCTAAAGAAGCCAA GGACTCTGAAGTAACTAAGAAGGAGCCTGCTGCACCTGCTACAACTGCAGCAGCTCCGAAGAGGAGGAATAGATGGGACCAGTCACAGGATGGTGAAGGT TCTGCTGGGGCTGCTAAGAAAGCTAAGACGGGCTCTGATTGGGATTTACCCGACGCAACTCCTGGGATTGGAAGGTGGGATGCTGCTACTCCCACGCCTG GTAGAGTTGGAGATGCGACCCCCTCGATGGGGAGGAGGAATAGATGGGATGAAACCCCAACTCCTGGAAGGGTAGCTGATTCGGATGCAACTCCTTCTGG TGGTGTCACTCCTGGTGCTACACCTGCTGGGGTGACTTGGGATGCAACTCCCAAAGGGTTGGCCACACCGACTCCTAAAAAACAAAGATCACGGTGGGAT GAAACTCCTGCAACTATGGGAAGTGCGACTCCGATGGCTGGGGCTACACCTGCCGCTGCATATACTCCTGGTGTTACTCCTGTTGGTGGGATTGAACTGG CCACCCCAACTCCGAGTCTCATTCAACGTGGTGCGCTTACTCCGGAGCAGTATAATCTATTGAGATGGGAGAAGGATATTGAAGAGAGGAATAGACCTTT GACTGATGAGGAATTGGATGCTATATTTCCCCTGGAAGGATACAAGATTTTGGAGCCACCAGCATCTTATGTTCCCATTAGGACTCCTGCCAGGAAATTG TTGGCTACACCCACTCCTATGGGGACTCCGCTTTATGCTATCCCTGAAGAGAATAGGGGGCAGCAATATGATGTGCCGAAAGAAGCTCCTGGTGGGTTGC CCCATATGAAGCCGGAGGATTATCAGTACTTTGGAGCCCTGTTAAATGAGGACGATGAGGAAGAGTTGACACCTGATGAACAAAAAGAGCGGAAGATTAT GAAGCTGTTGTTGAAGGTTAAGAATGGAACTCCACCTCAGCGGAAGACTGCTTTGAGACAGTTGACAGATAAGGCAAGAGAGTTCGGTGCTGGTCCACTG TTTAACAGGATTCTGCCGTTGCTTATGCAGCCCACTCTGGAAGATCAGGAGAGACATCTTCTTGTCAAGGTGATTGATAGGGTTTTGTATAAGTTGGATG AGTTGGTTAGGCCTTACGTGCATAAGATTCTTGTTGTTATTGAGCCGTTGCTCATTGATGAAGACTATTATGCCCGTGTTGAAGGAAGGGAGATCATTTC AAATTTGAGTAGAGCTGCTGGGTTGGCAACTATGATTGCTGCTATGCGTCCTGATATTGATAATATTGATGAATATGTTAGGAATACAACTGCTAGAGCT TTCAGTGTTGTGGCCTCTGCTCTTGGTATTCCAGCTCTGCTGCCTTTTCTGAAAGCTGTGTGTCAGAGTAAGAAGTCGTGGCAAGCTCGTCACACCGGTA TCAAGATTGTACAGCAGATTGCTATTCTCATTGGGTGTGCTGTTCTTCCTCATTTAAGGTCTCTGGTAGAAATTATAGAGCATGGACTAATTGACGAGAA TCCGAAAGTGAGAACTATCACTGCATTGTCTTTGGCTGCCCTTGCTGAGGCTTCTGCACCATATGGTATTGAAAGCTTCGACTCTGTTCTGAAACCCTTG TGGAAAGGAATAAGGTCACACCGCGGAAAGGTCTTGGCTGCCTTCTTGAAGGCAATTGGTTTTATCATTCCTCTGATGGATGCTATGTATGCCTCTTACT ACACTAAGGAAGTGATGTACATTCTCATCCGTGAGTTTCAGTCTCCTGATGAAGAAATGAAGAAGATTGTTCTGAAAGTGGTGAAGCAATGTGTCAGCAC TGAGGGTGTGGAACCAGATTACATCCGTAATGATATTCTTCCAGAATTCTTTAAGAACTTCTGGGTTAGAAGGATGGCATTGGATAGAAGAAACTACAAG CAACTTGTAGAAACCACAGTGGAGATTGCTAACAAGGTTGGTGTTAAAGATATTGTTGGGAGGATTGTTGAGGATCTTAAAGACGAGAGTGAGCCTTATC GTCGGATGGTTATGGAAACAATCGAGAAGGTGGTTACGAACTTGGGTTCTTCTGACATTGATGCTAGGTTGGAAGAGCTTTTGATAGATGGTATTCTGTA TGCTTTCCAAGAACAGACTAGTGATGATGCCAATGTGATGCTTAATGGGTTTGGAGCAGTTGTCAACTCTCTTGGGCAGAGAGTGAAACCTTATCTCCCT CAGATTTGTGGTACCATAAAGTGGCGGCTGAACAACAAAAGTGCGAAGGTGAGACAACAAGCAGCTGATCTTATTTCTAGGATTGCTGTTGTGATGAAGC AGTGCCATGAGGAGCAGCTTATGGGTCATCTTGGTGTTGTCTTGTACGAGTATTTGGGAGAAGAATACCCTGAAGTGTTGGGATCAGTCCCAGCTAGAGA ATGGATGAGGATCTGCTTTGAACTGCTTGAGATGCTGAAGGCGCACAAGAAGGGTATTCGTAGAGCTACCGTGAACACTTTCGGGTATATCGCCAAAGCC ATCGGTCCACAAGATGTTCTTGCAACTTTGCTGAACAATCTCAAGGTCCAGGAGCGCCAGAATCGTGTGTGTACCACTGTAGCTATTGCTATAGTTGCAG AAACTTGCTCTCCCTTCACAGTGCTTCCTGCCTTGATGAACGAGTACCGTGTTCCAGAGCTCAATGTCCAGAATGGTGTTTTGAAGTCCCTATCTTTTCT GTTCGAGTACATTGGCGAAATGGGTAAAGACTACATCTATGCAGTAACACCATTGCTCGAGGATGCCCTCATGGACAGGGACTTGGTTCACAGGCAGACT GCAGCTTCAGCTGTCAAGCATATGGCACTTGGCGTTGCTGGGTTGGGTTGCGAGGATGCTCTAGTTCACCTGCTCAACTTTGTGTGGCCGAACATATTCG AGACTTCTCCTCACGTGATAAATGCTGTAATGGAAGCCATAGAAGGAATGAGGGTAGCTCTGGGTGCTGCTGTTGTGTTGAACTATTGTCTGCAGGGGCT TTTCCACCCAGCTCGGAAAGTGCGGGAAGTTTACTGGAAGATTTACAACTCTCTTTACATTGGCGCACAGGACACGCTTGTGGCTGCTTATCCAGTGCTG GATGATGAGGAGAACAACGTATATAGCAGGCCTGAGTTGGTGATGTTCGTATGA
AA sequence Show only first row Show all	>Lus10034803 pacid=23142281 polypeptide=Lus10034803 locus=Lus10034803.g ID=Lus10034803.BGIv1.0 annot-version=v1.0 MDPEIAKTQEERKRMEQELASLTSLNYDKDLYGGTDKDSYVTSIPVNDDEDNDIADNEVARKLASYTAPKSLLKEMPRGGDDDDDGGFKKPSRIIDREDD YRRRRLNRVISPDRHDAFAMGEKTPDPSVRTYAEVMREEALKREREATLREISKKKKQEEEDAKEAKDSEVTKKEPAAPATTAAAPKRRNRWDQSQDGEG SAGAAKKAKTGSDWDLPDATPGIGRWDAATPTPGRVGDATPSMGRRNRWDETPTPGRVADSDATPSGGVTPGATPAGVTWDATPKGLATPTPKKQRSRWD ETPATMGSATPMAGATPAAAYTPGVTPVGGIELATPTPSLIQRGALTPEQYNLLRWEKDIEERNRPLTDEELDAIFPLEGYKILEPPASYVPIRTPARKL LATPTPMGTPLYAIPEENRGQQYDVPKEAPGGLPHMKPEDYQYFGALLNEDDEEELTPDEQKERKIMKLLLKVKNGTPPQRKTALRQLTDKAREFGAGPL FNRILPLLMQPTLEDQERHLLVKVIDRVLYKLDELVRPYVHKILVVIEPLLIDEDYYARVEGREIISNLSRAAGLATMIAAMRPDIDNIDEYVRNTTARA FSVVASALGIPALLPFLKAVCQSKKSWQARHTGIKIVQQIAILIGCAVLPHLRSLVEIIEHGLIDENPKVRTITALSLAALAEASAPYGIESFDSVLKPL WKGIRSHRGKVLAAFLKAIGFIIPLMDAMYASYYTKEVMYILIREFQSPDEEMKKIVLKVVKQCVSTEGVEPDYIRNDILPEFFKNFWVRRMALDRRNYK QLVETTVEIANKVGVKDIVGRIVEDLKDESEPYRRMVMETIEKVVTNLGSSDIDARLEELLIDGILYAFQEQTSDDANVMLNGFGAVVNSLGQRVKPYLP QICGTIKWRLNNKSAKVRQQAADLISRIAVVMKQCHEEQLMGHLGVVLYEYLGEEYPEVLGSVPAREWMRICFELLEMLKAHKKGIRRATVNTFGYIAKA IGPQDVLATLLNNLKVQERQNRVCTTVAIAIVAETCSPFTVLPALMNEYRVPELNVQNGVLKSLSFLFEYIGEMGKDYIYAVTPLLEDALMDRDLVHRQT AASAVKHMALGVAGLGCEDALVHLLNFVWPNIFETSPHVINAVMEAIEGMRVALGAAVVLNYCLQGLFHPARKVREVYWKIYNSLYIGAQDTLVAAYPVL DDEENNVYSRPELVMFV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G64270			splicing factor, putative (.1)		Lus10034803 [exp]	0	1
AT5G64270			splicing factor, putative (.1)		Lus10033347 [exp]	1.0	0.9814
AT4G10320			tRNA synthetase class I (I, L,...		Lus10024041 [exp]	2.4	0.9397
AT4G02560	HD	LD	luminidependens, Homeodomain-l...		Lus10009816 [exp]	4.2	0.9451
AT5G55300		MGO1, TOP1BETA,...	TOPOISOMERASE 1, MGOUN 1, DNA ...		Lus10032573 [exp]	6.5	0.9257
AT2G21440			RNA-binding (RRM/RBD/RNP motif...		Lus10042589 [exp]	6.6	0.9253
AT1G09770	MYB	ATCDC5, AtMYBCD...	ARABIDOPSIS THALIANA MYB DOMAI...		Lus10034133 [exp]	7.6	0.9195
AT4G30990			ARM repeat superfamily protein...		Lus10042447 [exp]	9.2	0.9294
AT1G04210			Leucine-rich repeat protein ki...		Lus10041180 [exp]	11.0	0.9258
AT4G38440		IYO	MINIYO, unknown protein		Lus10025099 [exp]	11.3	0.9028
AT4G17330		ATG2484-1	G2484-1 protein (.1)		Lus10007793 [exp]	11.4	0.9376

Compare expression of checked genes

Lus10034803 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.