Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G78910 609 / 0 Pseudouridine synthase family protein (.1) AT3G19440 240 / 1e-73 Pseudouridine synthase family protein (.1) AT1G76050 53 / 2e-07 Pseudouridine synthase family protein (.1.2) AT3G52260 47 / 2e-05 Pseudouridine synthase family protein (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10033350 [exp] 832 / 0 AT1G78910 658 / 0.0 Pseudouridine synthase family protein (.1) Lus10002811 [exp] 260 / 2e-81 AT3G19440 445 / 1e-153 Pseudouridine synthase family protein (.1) Lus10027863 [exp] 253 / 6e-79 AT3G19440 424 / 1e-145 Pseudouridine synthase family protein (.1) Lus10005619 [exp] 54 / 2e-07 AT1G76040 773 / 0.0 calcium-dependent protein kinase 29 (.1.2) Lus10017250 [exp] 52 / 9e-07 AT1G76050 531 / 0.0 Pseudouridine synthase family protein (.1.2) Lus10040385 [exp] 49 / 8e-06 AT3G52260 488 / 2e-173 Pseudouridine synthase family protein (.1.2.3) Lus10022437 [exp] 47 / 3e-05 AT5G51140 505 / 1e-177 Pseudouridine synthase family protein (.1.2) Lus10023503 [exp] 47 / 3e-05 AT3G52260 498 / 6e-178 Pseudouridine synthase family protein (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G228200 [exp] 653 / 0 AT1G78910 648 / 0.0 Pseudouridine synthase family protein (.1) Potri.009G095700 [exp] 275 / 5e-87 AT3G19440 483 / 2e-168 Pseudouridine synthase family protein (.1) Potri.002G016800 [exp] 58 / 8e-09 AT1G76050 504 / 1e-178 Pseudouridine synthase family protein (.1.2) Potri.015G101300 [exp] 42 / 0.0008 AT5G51140 512 / 0.0 Pseudouridine synthase family protein (.1.2) Potri.008G042000 [exp] 42 / 0.001 AT3G52260 494 / 5e-176 Pseudouridine synthase family protein (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0649 [flax] [poplar] PseudoU_synth PF00849 [flax] [poplar] PseudoU_synth_2 RNA pseudouridylate synthase
Representative CDS sequence Show only first row Show all	>Lus10034804 pacid=23142223 polypeptide=Lus10034804 locus=Lus10034804.g ID=Lus10034804.BGIv1.0 annot-version=v1.0 ATGGCGAAGAGAAGAAGTGCTCTCTACAGTGGAGCCTTATTTGCAGTTCGATTCTACTCTAGAATCGCTCCACCACCGCCTGCCTATGCACAACCGGTCA TCAGAGTTTCGAACAATATAGCTTATCTTGGTTCCCCTAAAGAAGGTCCAAAGCCCCGCCAGCTTCTTTCTTTGCCTCCGTTTCCAGGGCTGCCTCTTCC TGGGAAGACCTTGCTCGGTGATCCTGGGCGTCTCACTGCCATCAGCTGGGTCAAGTACTACTTCAATGAGATGTACGGTGACAATATTGAATCCCATTTT AAGAAGGGCCTTGTTTATGTGGAATGCCAAACTTGTAGCGACTCGATAGAATTAAAAGGATTGGAGAGATCGGTGAGAAAGATTAAGCCTCATGATGCAA TAGAAGTGGGAGCAAAGCTTCATGTCCCGGTATCAATTGCTGAGTCTAGAATATCAAAGAGATTTGACACCATACCATGTGGTACTTTATACCCAAATGC AGATGAGATTGACTACTTGCAAAGGCTTGTGAAGTACAAGGATGCAGCACTCATCGTCCTAAATAAGCCGCCAAAATTGCCTGTCAAGGGTAGTATGCCT GTTCATAATAGTATGGATGCATTGGCAGCTGCTGCTTTGTCTTATGATTATGACGAAGGACCCAAGTTGGTTCACCGTCTTGATAGGGAAAGTAGTGGGC TTATCTTATTGGGACGGACTCAAGAAAGTGTATCTTATCTTCAGTGGATATTCAGCAACCTGAGAAATGCGAAATCTCGATCTAAGGCCTGGAATGATGC ATGTGAAGCTACATACCAAAGGTACTGGGCATTAGTTATAGGCTCCCCGAAGGAGAAGGAAGGAGTGATTCGTGCTCCTCTTTCAAAGGTCCTTCTTGAT GATGGAAAGACGGAGAGAATTATCCTGGCACGGGATTCTGGGTTTGAACCGTCTCAAGAGGCCCTTACAGAATATCGAGTCTTAGGTCCTATGATGAACG GGTGCTCATGGCTCGAACTTCGTCCACTGACTAGCTGGAAGCATCAGCTCCGAGTCCACTGTGCTGAAGCGCTGGGTACTCCGATCGTGGGGGACTATAA ATATGGCTGGTTCGTGCACAACAGATGGAGGCAAATGCCTCGAGTGGATATCGAGCCATCTTCAGGGAAACCATACAAGTTACGGAGGCCAGTCGGCATA GATGTTCAGAAAGGAAGTGTGCTGTCGAAAGTACCGCTGCTGCATCTCCATTGCAGGGAGATGGTCCTTCCCAACATTGCCAAGTTCATGAATATCTTAA ATCAGAGATCAGATTCTCGTCAACGATCTGTGATGACGAGTGAACAAGCTGATGTCCTCCGGTTTGTTGGTGCAATGCCAAACCATATGAAAATTAGCTG GAATCTCATGTCATCTTATTTGGTGTGA
AA sequence Show only first row Show all	>Lus10034804 pacid=23142223 polypeptide=Lus10034804 locus=Lus10034804.g ID=Lus10034804.BGIv1.0 annot-version=v1.0 MAKRRSALYSGALFAVRFYSRIAPPPPAYAQPVIRVSNNIAYLGSPKEGPKPRQLLSLPPFPGLPLPGKTLLGDPGRLTAISWVKYYFNEMYGDNIESHF KKGLVYVECQTCSDSIELKGLERSVRKIKPHDAIEVGAKLHVPVSIAESRISKRFDTIPCGTLYPNADEIDYLQRLVKYKDAALIVLNKPPKLPVKGSMP VHNSMDALAAAALSYDYDEGPKLVHRLDRESSGLILLGRTQESVSYLQWIFSNLRNAKSRSKAWNDACEATYQRYWALVIGSPKEKEGVIRAPLSKVLLD DGKTERIILARDSGFEPSQEALTEYRVLGPMMNGCSWLELRPLTSWKHQLRVHCAEALGTPIVGDYKYGWFVHNRWRQMPRVDIEPSSGKPYKLRRPVGI DVQKGSVLSKVPLLHLHCREMVLPNIAKFMNILNQRSDSRQRSVMTSEQADVLRFVGAMPNHMKISWNLMSSYLV

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G78910			Pseudouridine synthase family ...		Lus10034804 [exp]	0	1
AT5G61460		SMC6B, ATRAD18,...	STRUCTURAL MAINTENANCE OF CHRO...		Lus10027219 [exp]	1.0	0.9160
AT1G78910			Pseudouridine synthase family ...		Lus10033350 [exp]	1.4	0.8838
AT2G25870			haloacid dehalogenase-like hyd...		Lus10038133 [exp]	2.4	0.8787
					Lus10028270 [exp]	3.7	0.8645
AT1G78010			tRNA modification GTPase, puta...		Lus10029578 [exp]	4.0	0.8612
AT5G55700		BAM4, BMY6	BETA-AMYLASE 6, beta-amylase 4...		Lus10022516 [exp]	4.5	0.8343
AT1G55320		AAE18	acyl-activating enzyme 18 (.1....		Lus10012931 [exp]	5.3	0.8781
AT3G04820			Pseudouridine synthase family ...		Lus10015931 [exp]	5.5	0.8672
AT3G04650			FAD/NAD(P)-binding oxidoreduct...		Lus10022002 [exp]	5.7	0.8545
AT2G35140			DCD (Development and Cell Deat...		Lus10018316 [exp]	6.3	0.8709

Compare expression of checked genes

Lus10034804 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.