Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G58130 260 / 5e-88 N-acetylglucosaminylphosphatidylinositol de-N-acetylase family protein (.1.2) AT2G27340 254 / 2e-86 N-acetylglucosaminylphosphatidylinositol de-N-acetylase family protein (.1.2.3.4)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G041700 [exp] 298 / 4e-103 AT3G58130 297 / 5e-102 N-acetylglucosaminylphosphatidylinositol de-N-acetylase family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF02585 [flax] [poplar] PIG-L GlcNAc-PI de-N-acetylase
Representative CDS sequence Show only first row Show all	>Lus10034805 pacid=23142235 polypeptide=Lus10034805 locus=Lus10034805.g ID=Lus10034805.BGIv1.0 annot-version=v1.0 ATGGGATTTCTGTTCATTCTTGTTTCACTAATCATGCTATGGATAGCTTCGCTATCGAAGATTCTCCAGACAGCAAGCTCGCAATCTAAGAACACCTTTA TGAAAGAAGGCAATGCAGATGGCCAGGGAAATACCAGAAAGGATGAGCTTTACCAGGCTTGTTTAGTCCTCAAGGTTCCAGTTCAGCAAGTGAAGATACT GGACCATCCAGATTTGCAGGATGGTTTTGGACTGGTGTGGGACCATGACTTATTGTCTAAGATAATCCAAGGCGAGGTGTCTAATCATCATATTGACACA GTCATTACTTTCGACAGTCATGGAGTATCTGGTCATTGTAATCACCGTGATGTGCATTATGGTGTAATCAAGCTGTTACAAGATTCCTCAGAAAGACGTA TAGAAGCCTGGGAACTTGTCAGCAGTGACATACTGCGTAAGTATAGTGGACCTGTCGATATTTGGTTGTCCATGTTGCTAGCTATGAAGTCAGGCAACAG GACGACATGCTGTTTGTTGAATGAGCAACCCTGGAAAAGCTTCAATGCAATGGCAGCACATTCAAGCCAATGGGTCTGGTTTCGCAAGCTCTTCGTATCG TTTTCTAGCTACACGTACGTGAACTCGCTCAGGAAGATCAACTAG
AA sequence Show only first row Show all	>Lus10034805 pacid=23142235 polypeptide=Lus10034805 locus=Lus10034805.g ID=Lus10034805.BGIv1.0 annot-version=v1.0 MGFLFILVSLIMLWIASLSKILQTASSQSKNTFMKEGNADGQGNTRKDELYQACLVLKVPVQQVKILDHPDLQDGFGLVWDHDLLSKIIQGEVSNHHIDT VITFDSHGVSGHCNHRDVHYGVIKLLQDSSERRIEAWELVSSDILRKYSGPVDIWLSMLLAMKSGNRTTCCLLNEQPWKSFNAMAAHSSQWVWFRKLFVS FSSYTYVNSLRKIN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G58130			N-acetylglucosaminylphosphatid...		Lus10034805 [exp]	0	1
AT5G59880		ADF3	actin depolymerizing factor 3 ...		Lus10025318 [exp]	1.4	0.8566
AT1G55310		ATSCL33, SR33, ...	SC35-like splicing factor 33 (...		Lus10013539 [exp]	2.0	0.8388
AT5G16020		GEX3	gamete-expressed 3 (.1)		Lus10034090 [exp]	2.6	0.8643
AT1G26660			Prefoldin chaperone subunit fa...		Lus10026631 [exp]	3.9	0.8537
AT5G64560		MRS2-2, ATMGT9	magnesium transporter 9 (.1.2)		Lus10041169 [exp]	5.5	0.8352
AT5G45110		ATNPR3, NPR3	NPR1-like protein 3 (.1)		Lus10036200 [exp]	11.0	0.8369
AT4G27120			unknown protein		Lus10043066 [exp]	12.0	0.8035
AT2G20495			unknown protein		Lus10024909 [exp]	13.4	0.8012
AT5G42470			unknown protein		Lus10034533 [exp]	13.8	0.7808
					Lus10030083 [exp]	14.5	0.8101

Compare expression of checked genes

Lus10034805 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.