Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G20240 441 / 2e-155 Mitochondrial substrate carrier family protein (.1) AT4G32400 201 / 6e-61 EMB42, EMB104, ATBT1, SHS1 SODIUM HYPERSENSITIVE 1, EMBRYO DEFECTIVE 42, EMBRYO DEFECTIVE 104, ARABIDOPSIS THALIANA BRITTLE 1, Mitochondrial substrate carrier family protein (.1) AT3G51870 102 / 6e-24 Mitochondrial substrate carrier family protein (.1) AT4G01100 100 / 2e-23 ADNT1 adenine nucleotide transporter 1 (.1.2) AT5G51050 101 / 3e-23 APC2 ATP/phosphate carrier 2, Mitochondrial substrate carrier family protein (.1) AT5G01500 98 / 2e-22 TAAC thylakoid ATP/ADP carrier (.1) AT3G21390 96 / 3e-22 Mitochondrial substrate carrier family protein (.1) AT4G26180 95 / 1e-21 Mitochondrial substrate carrier family protein (.1) AT5G61810 94 / 2e-21 APC1 ATP/phosphate carrier 1, Mitochondrial substrate carrier family protein (.1.2) AT5G48970 89 / 1e-19 Mitochondrial substrate carrier family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10033351 [exp] 640 / 0 AT3G20240 496 / 4e-177 Mitochondrial substrate carrier family protein (.1) Lus10002902 [exp] 186 / 4e-55 AT4G32400 522 / 0.0 SODIUM HYPERSENSITIVE 1, EMBRYO DEFECTIVE 42, EMBRYO DEFECTIVE 104, ARABIDOPSIS THALIANA BRITTLE 1, Mitochondrial substrate carrier family protein (.1) Lus10002026 [exp] 186 / 6e-55 AT4G32400 525 / 0.0 SODIUM HYPERSENSITIVE 1, EMBRYO DEFECTIVE 42, EMBRYO DEFECTIVE 104, ARABIDOPSIS THALIANA BRITTLE 1, Mitochondrial substrate carrier family protein (.1) Lus10030076 [exp] 182 / 3e-53 AT4G32400 424 / 3e-147 SODIUM HYPERSENSITIVE 1, EMBRYO DEFECTIVE 42, EMBRYO DEFECTIVE 104, ARABIDOPSIS THALIANA BRITTLE 1, Mitochondrial substrate carrier family protein (.1) Lus10033948 [exp] 104 / 9e-25 AT4G01100 604 / 0.0 adenine nucleotide transporter 1 (.1.2) Lus10032364 [exp] 102 / 2e-24 AT4G01100 572 / 0.0 adenine nucleotide transporter 1 (.1.2) Lus10033947 [exp] 102 / 3e-24 AT4G01100 602 / 0.0 adenine nucleotide transporter 1 (.1.2) Lus10016736 [exp] 103 / 5e-24 AT5G51050 749 / 0.0 ATP/phosphate carrier 2, Mitochondrial substrate carrier family protein (.1) Lus10032522 [exp] 102 / 6e-24 AT5G51050 563 / 0.0 ATP/phosphate carrier 2, Mitochondrial substrate carrier family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G004100 [exp] 491 / 1e-174 AT3G20240 494 / 1e-176 Mitochondrial substrate carrier family protein (.1) Potri.010G253600 [exp] 407 / 9e-142 AT3G20240 388 / 6e-135 Mitochondrial substrate carrier family protein (.1) Potri.018G029200 [exp] 190 / 7e-57 AT4G32400 483 / 2e-171 SODIUM HYPERSENSITIVE 1, EMBRYO DEFECTIVE 42, EMBRYO DEFECTIVE 104, ARABIDOPSIS THALIANA BRITTLE 1, Mitochondrial substrate carrier family protein (.1) Potri.006G252100 [exp] 189 / 1e-56 AT4G32400 493 / 4e-175 SODIUM HYPERSENSITIVE 1, EMBRYO DEFECTIVE 42, EMBRYO DEFECTIVE 104, ARABIDOPSIS THALIANA BRITTLE 1, Mitochondrial substrate carrier family protein (.1) Potri.002G168100 [exp] 106 / 9e-26 AT4G01100 565 / 0.0 adenine nucleotide transporter 1 (.1.2) Potri.003G137500 [exp] 103 / 8e-25 AT4G01100 618 / 0.0 adenine nucleotide transporter 1 (.1.2) Potri.001G094100 [exp] 103 / 1e-24 AT4G01100 563 / 0.0 adenine nucleotide transporter 1 (.1.2) Potri.006G226300 [exp] 101 / 5e-24 AT1G14560 476 / 7e-170 Mitochondrial substrate carrier family protein (.1) Potri.016G115400 [exp] 100 / 2e-23 AT5G01500 517 / 0.0 thylakoid ATP/ADP carrier (.1) Potri.014G095400 [exp] 100 / 2e-23 AT4G01100 599 / 0.0 adenine nucleotide transporter 1 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00153 [flax] [poplar] Mito_carr Mitochondrial carrier protein
Representative CDS sequence Show only first row Show all	>Lus10034806 pacid=23142163 polypeptide=Lus10034806 locus=Lus10034806.g ID=Lus10034806.BGIv1.0 annot-version=v1.0 ATGGGTTTTGAATTGGAATCTCAGCAGCGCACGGTGAAGAAGCCCAACAACACCAAAGTCGAAGGTGTGTTCGGCGACGTCTGCGCCATGACGGTGTTGC TCCCCAAGGGACTTGAGCTTGACAATTTCGATAATCCTGTCTCGGTTCTTCCTCCTCCTCCTCCTCCATCTGATTCGCTTGACTTCCCCTTTCGTCTTCC TGGCATAGGCCTTGCAATCCGAAATATCACCAAGACTAGAGAAGTTGGGGAGTTCCTCAGTGGTGCCTTAGCTGGTGCAATGTCCAAAGCTGTACTTGCT CCCTTAGAGACCATCAGGACAAGGATGGTTGTGGGGGTTGGATCTAAAAACATCTCTGGCAGTTTTATAGAAGTTGTTGAGCAACAAGGCTGGCAAGGGC TGTGGGCTGGCAATGCTATCAATATGCTCCGTATCGTCCCAACCCAAGCAATTGAGCTTGGTACATTTGAGTGTGTCAAGCGAACATTGACCGCAGCACA AGAGAAAGCTAAACAATCTGAATCTCCAAGACTACAAAGTGGTTCTTTCAGATTGAACTTTTCTCTTTCATGCATTTCTCCTGTTGCTGTCGCCGGTGCT GCTGCTGGCATCGCTAGCACTCTCGTGTGTCACCCTCTTGAAGTTTTGAAGGACCGGTTGACTGTTAGCCCCGACCTTTACCCTAACCTAACTCTAGCAA TTAGTAGAATTTACAAGGATGGAGGTTTAGGTGCCTTCTATTCTGGTCTTAAACCTACACTGATTGGTATGCTTCCGTATAGTACATGCTACTATTTCAT GTACGATACTGTGAAGACTAAATATTGCAAGTCGAAGAATAAGAAGTCGTTGAGTCGTCCGGAAATGCTCGCCCTTGGTGCAGTTGCAGGGTTGACGGCC AGCACCATAAGCTTTCCGCTGGAGGTAGCTAGGAAACGACTGATGGTGGGAGCTCTGAAGGGCAAATGTCCCCCTAACATGGCGGCTGCTCTCGCTGATG TCATCCGGGAGGAGGGACTACTGGGGATGTACAGAGGCTGGGGTGCAAGTTGTTTGAAAGTCATGCCAAACTCTGGCATCACTTGGGTGTTTTACGAAGC GTGGAAAGACATACTACTAGGTGAGAAGCGACTTCTATGA
AA sequence Show only first row Show all	>Lus10034806 pacid=23142163 polypeptide=Lus10034806 locus=Lus10034806.g ID=Lus10034806.BGIv1.0 annot-version=v1.0 MGFELESQQRTVKKPNNTKVEGVFGDVCAMTVLLPKGLELDNFDNPVSVLPPPPPPSDSLDFPFRLPGIGLAIRNITKTREVGEFLSGALAGAMSKAVLA PLETIRTRMVVGVGSKNISGSFIEVVEQQGWQGLWAGNAINMLRIVPTQAIELGTFECVKRTLTAAQEKAKQSESPRLQSGSFRLNFSLSCISPVAVAGA AAGIASTLVCHPLEVLKDRLTVSPDLYPNLTLAISRIYKDGGLGAFYSGLKPTLIGMLPYSTCYYFMYDTVKTKYCKSKNKKSLSRPEMLALGAVAGLTA STISFPLEVARKRLMVGALKGKCPPNMAAALADVIREEGLLGMYRGWGASCLKVMPNSGITWVFYEAWKDILLGEKRLL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G20240			Mitochondrial substrate carrie...		Lus10034806 [exp]	0	1
AT3G20240			Mitochondrial substrate carrie...		Lus10033351 [exp]	1.4	0.8681
AT3G22980			Ribosomal protein S5/Elongatio...		Lus10007838 [exp]	6.9	0.7141
AT1G71260		WHY2, ATWHY2	WHIRLY 2 (.1)		Lus10017892 [exp]	11.0	0.7530
AT4G24670		TAR2	tryptophan aminotransferase re...		Lus10027678 [exp]	11.5	0.7647
AT5G63120			P-loop containing nucleoside t...		Lus10043334 [exp]	13.0	0.7042
AT3G58570			P-loop containing nucleoside t...		Lus10001074 [exp]	14.3	0.7791
AT1G65000			unknown protein		Lus10026159 [exp]	17.7	0.6793
AT2G18280	TUB	AtTLP2	tubby like protein 2 (.1.2)		Lus10028309 [exp]	19.5	0.7018
AT1G57610			Protein of unknown function (D...		Lus10019127 [exp]	22.6	0.7199
					Lus10000293 [exp]	26.0	0.6663

Compare expression of checked genes

Lus10034806 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.