Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G78895 225 / 2e-76 Reticulon family protein (.1) AT1G16825 207 / 3e-69 Reticulon family protein (.1) AT3G10915 45 / 4e-06 Reticulon family protein (.1.2.3.4.5.6)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10033352 [exp] 236 / 1e-80 AT1G78895 205 / 1e-68 Reticulon family protein (.1) Lus10029041 [exp] 44 / 1e-05 AT3G10915 170 / 1e-54 Reticulon family protein (.1.2.3.4.5.6) Lus10034224 [exp] 44 / 2e-05 AT3G10915 291 / 1e-100 Reticulon family protein (.1.2.3.4.5.6)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G004200 [exp] 261 / 2e-90 AT1G78895 229 / 1e-77 Reticulon family protein (.1) Potri.006G218400 [exp] 40 / 0.0004 AT2G26260 816 / 0.0 3beta-hydroxysteroid-dehydrogenase/decarboxylase isoform 2 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0484 [flax] [poplar] Peroxisome PF02453 [flax] [poplar] Reticulon Reticulon
Representative CDS sequence Show only first row Show all	>Lus10034807 pacid=23142251 polypeptide=Lus10034807 locus=Lus10034807.g ID=Lus10034807.BGIv1.0 annot-version=v1.0 ATGGAGAGTATCGGCGACGGCGGCGGCGGCAGCGTCAAGAGGAGCGAAATAGGGAAGCCAATTATAGGAATGGTCTGTGGTTCGCTTGTATATTACCACT GTGCGTATCGGAACTCCAGCCTTCTCTCTCTTCTATCCGACGTCTTCATCGTCCTTCTCTGCTCCCTCGCCATTCTCGGCCTTCTCTTCCGCCAATTGAA CATCTCATTACCTGTGGATCCACTTGAGTGGCAGATCTCTCAGGACACTGCTAACACTATTGTTGCGTGGTTTGCTAATACCATTGGAGCTGCTGAATCT GTGTTGAGGGTCGCAGCAACTGGACATGACAAGAGGTTATTCTTTAAGGTTGTAATCTGTCTCTATGTACTATCAGCTTTGGGACGATTGGTCTCAGGGG TCACAGTTTCCTATGCTGCATTGTGCATATTTTGCATGTACATGCTGGCCGAGAACTCGGAAACATGCAGCAGCTGTCTCTCTTGGCTGTTAGGGCGTAG CAACAACACTTCTGGAGAAGATAGCTAG
AA sequence Show only first row Show all	>Lus10034807 pacid=23142251 polypeptide=Lus10034807 locus=Lus10034807.g ID=Lus10034807.BGIv1.0 annot-version=v1.0 MESIGDGGGGSVKRSEIGKPIIGMVCGSLVYYHCAYRNSSLLSLLSDVFIVLLCSLAILGLLFRQLNISLPVDPLEWQISQDTANTIVAWFANTIGAAES VLRVAATGHDKRLFFKVVICLYVLSALGRLVSGVTVSYAALCIFCMYMLAENSETCSSCLSWLLGRSNNTSGEDS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G78895			Reticulon family protein (.1)		Lus10034807 [exp]	0	1
AT5G59590		UGT76E2	UDP-glucosyl transferase 76E2 ...		Lus10016460 [exp]	3.6	0.9132
AT4G34660			SH3 domain-containing protein ...		Lus10017500 [exp]	18.2	0.8643
AT3G05660		AtRLP33	receptor like protein 33 (.1)		Lus10002214 [exp]	19.7	0.8862
AT5G55530			Calcium-dependent lipid-bindin...		Lus10003765 [exp]	19.8	0.8782
AT4G35470		PIRL4, DREB1C	plant intracellular ras group-...		Lus10004559 [exp]	19.8	0.8847
AT2G35270	AT-hook	GIK, 2-ATH, AHL...	GIANT KILLER, Predicted AT-hoo...		Lus10000519 [exp]	21.6	0.8364
AT1G75170			Sec14p-like phosphatidylinosit...		Lus10016312 [exp]	22.5	0.8333
AT4G31820		MAB4, ENP, NPY1	NAKED PINS IN YUC MUTANTS 1, M...		Lus10026256 [exp]	23.9	0.8740
AT5G13700		ATPAO1, APAO	polyamine oxidase 1 (.1)		Lus10029495 [exp]	24.6	0.8853
AT4G15630			Uncharacterised protein family...		Lus10012809 [exp]	24.7	0.8625

Compare expression of checked genes

Lus10034807 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.