Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G20250 753 / 0 APUM5 pumilio 5 (.1) AT4G25880 551 / 0 APUM6 pumilio 6 (.1.2.3) AT2G29190 485 / 1e-155 APUM2 pumilio 2 (.1.2) AT2G29140 479 / 3e-153 APUM3 pumilio 3 (.1) AT2G29200 478 / 5e-153 APUM1 pumilio 1 (.1) AT3G10360 450 / 1e-141 APUM4 pumilio 4 (.1) AT1G22240 192 / 2e-52 APUM8 pumilio 8 (.1) AT5G56510 186 / 9e-50 APUM12 pumilio 12 (.1) AT1G78160 182 / 4e-48 APUM7 pumilio 7 (.1) AT4G08840 155 / 1e-39 APUM11 pumilio 11 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10033353 [exp] 1560 / 0 AT3G20250 732 / 0.0 pumilio 5 (.1) Lus10000516 [exp] 482 / 3e-162 AT2G29200 638 / 0.0 pumilio 1 (.1) Lus10002708 [exp] 501 / 2e-161 AT2G29200 1009 / 0.0 pumilio 1 (.1) Lus10016513 [exp] 487 / 5e-155 AT2G29190 1083 / 0.0 pumilio 2 (.1.2) Lus10040782 [exp] 473 / 7e-150 AT2G29190 1095 / 0.0 pumilio 2 (.1.2) Lus10001567 [exp] 468 / 1e-149 AT2G29200 977 / 0.0 pumilio 1 (.1) Lus10004976 [exp] 468 / 6e-149 AT2G29200 971 / 0.0 pumilio 1 (.1) Lus10037976 [exp] 461 / 3e-146 AT3G10360 941 / 0.0 pumilio 4 (.1) Lus10038706 [exp] 455 / 9e-144 AT3G10360 928 / 0.0 pumilio 4 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G004300 [exp] 1096 / 0 AT3G20250 783 / 0.0 pumilio 5 (.1) Potri.003G009900 [exp] 809 / 0 AT4G25880 725 / 0.0 pumilio 6 (.1.2.3) Potri.006G165100 [exp] 800 / 0 AT4G25880 742 / 0.0 pumilio 6 (.1.2.3) Potri.010G201100 [exp] 501 / 4e-161 AT2G29200 923 / 0.0 pumilio 1 (.1) Potri.001G243400 [exp] 491 / 1e-156 AT2G29190 1071 / 0.0 pumilio 2 (.1.2) Potri.009G034900 [exp] 489 / 3e-156 AT2G29190 1055 / 0.0 pumilio 2 (.1.2) Potri.008G058300 [exp] 485 / 4e-155 AT2G29200 863 / 0.0 pumilio 1 (.1) Potri.008G036500 [exp] 456 / 1e-143 AT3G10360 907 / 0.0 pumilio 4 (.1) Potri.010G225600 [exp] 444 / 1e-139 AT3G10360 868 / 0.0 pumilio 4 (.1) Potri.003G222300 [exp] 217 / 5e-59 AT5G56510 497 / 4e-168 pumilio 12 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF00806 [flax] [poplar] PUF Pumilio-family RNA binding repeat CL0020 [flax] [poplar] PF07990 [flax] [poplar] NABP Nucleic acid binding protein NABP
Representative CDS sequence Show only first row Show all	>Lus10034808 pacid=23142236 polypeptide=Lus10034808 locus=Lus10034808.g ID=Lus10034808.BGIv1.0 annot-version=v1.0 ATGGCAACTGAGAGCCCTGTGAGAATGGTGGAAGGTAGAAAATGGTCATCAACCAAGGATGCTGCTAGTTATGGATCACCCTTAAAGTCGTCTATTGCTG CTGAAGAATTGGGGTTGCTTCTTAAAGGGCATAGGATGCACACAGATCAATCAGAAAGTGTTCCGAATCGAAGTGGTAGTGCACCGCCAAGTATGGAAGG GTCTTTTGCAGCTATAGGGAATCTCTTAGCTCAACAGAACCTGAACATGAATCCTAGCTTGGAAAGCTTACACAATGCTATTGAGAATTGCGAGTCGGAA GAACAGCTGCGCTCTGATCCTGCTTATTTGGCTTACTATTGTTCTAATATAAACCTGAATCCAAGACTCCCACCACCACTGTTATCTCGAGAGAATCGGC ACTTGGTACGCCATATTGGTGGTTTGGGCAATAACTGGAGATCTACTTCAGTAGATGACTCTGGCAATGTCTCCTTGCACTTGTCTGGAGGCTCCCTTTC AACTCATAAGGAGGAGCCTGAAGATGAAAGATCATCCAAGGAAGAATCAGAAAAATCCTTTGATAATAGCAGTGTTCTCATCTCGGGCCATGGTGCTTTT GCAGCTGCTCGTCATAAAAGTCTAGTGGATCTCATACAGGAAGACTTCCCTCGGACCCCTTCTCCTGTGTATAGTAATTCTCGTTCCTCAGGTCATGCTG CAGATGATGCTGAACAAGATATCCATGCTGCTACATCGAATATTTCTTCTATTAGCTTGTCAGAAGCATCCGAAAAAGGTGGTGGTTCTGATGTTGATGT TGATGCAGATGCATATGAACTTGAGGTTCATGCTCCTAAATTATCACCGGGAAATGATAGTCAAACATCCTCTTTCCCAAGAACTCCGCTCAAGAAAAGG GATGAATCTGGCACAAATGAAGCTGGTCAGGAAGGTGATTTCCCTATTATTGGCTCCGTAGCAGAGCCTAGGATGAGAAACAGACAAGAGCAACAATCTT ACAGCAGGAATGCACCTCAGCAGCATCCATCTATGCATAATACCAATTCACATCAGGCTCATGGACTCCAAGCTCTCATGGTTTCACAAGCAATGAATCA TCCTCACGGTCCTGTTAATAACATATCCCATGGCCACCCAAGTTTCCCATCAATGGACGTACAGCCATCATTGAACTCCTCTACACTTAACCCTCCACTA TATGCAACTGCAGCAGCCTATATGACATCAGGGAGTCCATTCTATCCAAACTTCCAACCATCTGGTCTGTACTCTACACATTATGGTTTGGGAGGATATG CACTGGGTTCAACGTTTCTTCCCCCATATATGACCAGCTATCCTTCACATGGTCCAATTCCTATGCCATTTGGTGCTGCTTTGGCACCAGGTACTGATGG CAGGACTGCTGCTCCCTTGACTGGGGAAAGCATTGCACATATAGGAGGCTCACATCAGCAAGGGAAGTTTTATGGGCCTCATGGATTAATGCATCAACCT CCATCTCTCATGGATCCTCTTCACATGCAATATTTTCAGCATCCATTCGGAGATGCATATGGTCCCACAGTTCAGCATGACCACCTAGCATCAAGTGGAA CTAGTGGGGCTCAACTCGAAGCCGCCTTTGCTCAAAGGAGAGAGCTGTCTGCTCCTACATACTTGGCCGACAGGAACCTCCAACCTCCTACCTATGGAAA TCTAAGCGTTCCAAGCCCAGGAAAAGTAGGAGTTACTGGCAATAGCTACTATGGGGGGCCTGGAACTATCGGTGTGATGTCCCAGTTCCCAGCCTCACCT CTTCCTAGTCCTGTATTGCCTTCTTCCCCAGTGGCGACAGTGAATCATTTTGCACGGCGAAGTGAAGGAAGGTATCCCCAGGCTTCAAACAGAAATGCAG GCCTCTACTCAGGAAGTCAAGGCCCAAGGGGGATCAACAGCTTTGATGACCACAAAAGGCATTACTTTCTTGAAGAGCTCAAATCGAGCAATGCACGCAA GTTTGAACTTTCTGATATAGTGGGCCATATAGTTGAATTCAGTGTTGATCAACATGGAAGTCGATTTATCCAGCAAAAGCTGGAACACTGCAGTGCCGAG GAGAAAGATTCTGTCTTTAAGGAAGTGCTTCCTCATGCTTCAAAGTTGATGACTGATGTTTTTGGAAATTATGTTATACAAAAGTTTTTCGAACATGGAA ATTCTGAACAGCAAAAAGAGCTTGCAGATAAACTTGCTGGCCAGGTACTGGAGTTGAGTTTGCAGATGTATGGTTGTCGCGTGATACAGAAGGCCCTTGA GGTGATCGAGCTTGACCAGAAAGCCCAACTCGTTCAAGAGCTTGATGGTCACGTGATGCGATGCGTTCGTGATCAGAATGGGAATCATGTGATCCAGAAA TGCATAGAATGTCTTCCTGCAGAAAATATTGATTTTATTATTTCTGCTTTTAGAGGCCAAGTTGCAACACTGTCTACTCATCCTTACGGATGTCGTGTCA TTCAAAGAGTTCTGGAACATTGTTCTGAAGGTCAGCAAAGCCAGTGTATCGTTGATGAGATTTTGGAATCTGCTTTCCATCTTGCTCAAGACCAGTATGG AAACTATGTCACCCAGCATGTTCTGGAGAGGGGTAAGGAGTATGAGAGGAGTCAAATTATCAGCAAGTTGAATGGGAAGGTCATACAGATGAGTCAGCAT AAATATGCATCAAATGTTGTTGAGAAGTGTCTCGAATATGGTGATGTTGCTGAACGTGACCTCTTGATAGAGGAGATCATTAGGCGACCTGAAGATAACG ATGGCTTGTTGACAATGATGAAGGACCAATTTGCCAATTATGTGATTCAGAAGATTCTTGATATTGGGAGTGAGAGGCAGAAAGAAGTACTGCTCAATCA CATAAAACTCCATATTAATGCTTTGAAGAAATACACTTATGGGAAGCACATAGTTGCTCGGTACGAACAGCTATGTGGTGAAGGTATGCATCTCTGTGTT TGTACATTCATTTTTTCGGTGGCTTCATCATCTTAG
AA sequence Show only first row Show all	>Lus10034808 pacid=23142236 polypeptide=Lus10034808 locus=Lus10034808.g ID=Lus10034808.BGIv1.0 annot-version=v1.0 MATESPVRMVEGRKWSSTKDAASYGSPLKSSIAAEELGLLLKGHRMHTDQSESVPNRSGSAPPSMEGSFAAIGNLLAQQNLNMNPSLESLHNAIENCESE EQLRSDPAYLAYYCSNINLNPRLPPPLLSRENRHLVRHIGGLGNNWRSTSVDDSGNVSLHLSGGSLSTHKEEPEDERSSKEESEKSFDNSSVLISGHGAF AAARHKSLVDLIQEDFPRTPSPVYSNSRSSGHAADDAEQDIHAATSNISSISLSEASEKGGGSDVDVDADAYELEVHAPKLSPGNDSQTSSFPRTPLKKR DESGTNEAGQEGDFPIIGSVAEPRMRNRQEQQSYSRNAPQQHPSMHNTNSHQAHGLQALMVSQAMNHPHGPVNNISHGHPSFPSMDVQPSLNSSTLNPPL YATAAAYMTSGSPFYPNFQPSGLYSTHYGLGGYALGSTFLPPYMTSYPSHGPIPMPFGAALAPGTDGRTAAPLTGESIAHIGGSHQQGKFYGPHGLMHQP PSLMDPLHMQYFQHPFGDAYGPTVQHDHLASSGTSGAQLEAAFAQRRELSAPTYLADRNLQPPTYGNLSVPSPGKVGVTGNSYYGGPGTIGVMSQFPASP LPSPVLPSSPVATVNHFARRSEGRYPQASNRNAGLYSGSQGPRGINSFDDHKRHYFLEELKSSNARKFELSDIVGHIVEFSVDQHGSRFIQQKLEHCSAE EKDSVFKEVLPHASKLMTDVFGNYVIQKFFEHGNSEQQKELADKLAGQVLELSLQMYGCRVIQKALEVIELDQKAQLVQELDGHVMRCVRDQNGNHVIQK CIECLPAENIDFIISAFRGQVATLSTHPYGCRVIQRVLEHCSEGQQSQCIVDEILESAFHLAQDQYGNYVTQHVLERGKEYERSQIISKLNGKVIQMSQH KYASNVVEKCLEYGDVAERDLLIEEIIRRPEDNDGLLTMMKDQFANYVIQKILDIGSERQKEVLLNHIKLHINALKKYTYGKHIVARYEQLCGEGMHLCV CTFIFSVASSS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G20250		APUM5	pumilio 5 (.1)		Lus10034808 [exp]	0	1
AT3G20250		APUM5	pumilio 5 (.1)		Lus10033353 [exp]	1.4	0.9740
AT4G33950		ATOST1, P44, SR...	SNF1-RELATED PROTEIN KINASE 2....		Lus10027931 [exp]	3.5	0.9724
AT5G20660			Zn-dependent exopeptidases sup...		Lus10037997 [exp]	3.5	0.9669
AT5G41810			unknown protein		Lus10003901 [exp]	3.5	0.9766
AT1G56090			Tetratricopeptide repeat (TPR)...		Lus10031774 [exp]	4.7	0.9609
AT5G26240		ATCLC-D, CLC-D	chloride channel D (.1)		Lus10002453 [exp]	4.9	0.9696
AT2G20190		ATCLASP	CLIP-associated protein (.1)		Lus10022838 [exp]	5.7	0.9558
AT5G26820		RTS3, MAR1, ATI...	MULTIPLE ANTIBIOTIC RESISTANCE...		Lus10031421 [exp]	6.0	0.9622
AT1G04920		ATSPS3F	sucrose phosphate synthase 3F ...		Lus10016657 [exp]	6.3	0.9618
AT1G63800		UBC5	ubiquitin-conjugating enzyme 5...		Lus10036372 [exp]	6.5	0.9731

Compare expression of checked genes

Lus10034808 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.