Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G20260 400 / 7e-137 Protein of unknown function (DUF1666) (.1) AT1G73850 108 / 3e-25 Protein of unknown function (DUF1666) (.1) AT5G39785 96 / 8e-21 Protein of unknown function (DUF1666) (.1), Protein of unknown function (DUF1666) (.2) AT1G69610 71 / 7e-13 Protein of unknown function (DUF1666) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10033354 [exp] 581 / 0 AT3G20260 462 / 5e-162 Protein of unknown function (DUF1666) (.1) Lus10027226 [exp] 145 / 6e-38 AT1G73850 455 / 5e-153 Protein of unknown function (DUF1666) (.1) Lus10038936 [exp] 142 / 4e-37 AT1G73850 457 / 4e-155 Protein of unknown function (DUF1666) (.1) Lus10015368 [exp] 93 / 7e-20 AT5G39785 445 / 3e-148 Protein of unknown function (DUF1666) (.1), Protein of unknown function (DUF1666) (.2) Lus10037176 [exp] 79 / 2e-15 AT5G39785 334 / 4e-106 Protein of unknown function (DUF1666) (.1), Protein of unknown function (DUF1666) (.2) Lus10036751 [exp] 77 / 6e-15 AT5G39785 328 / 7e-104 Protein of unknown function (DUF1666) (.1), Protein of unknown function (DUF1666) (.2) Lus10007264 [exp] 77 / 1e-14 AT5G39785 411 / 2e-135 Protein of unknown function (DUF1666) (.1), Protein of unknown function (DUF1666) (.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G004400 [exp] 476 / 1e-166 AT3G20260 426 / 3e-147 Protein of unknown function (DUF1666) (.1) Potri.012G056400 [exp] 145 / 7e-38 AT1G73850 397 / 5e-131 Protein of unknown function (DUF1666) (.1) Potri.015G046900 [exp] 140 / 3e-36 AT1G73850 416 / 2e-138 Protein of unknown function (DUF1666) (.1) Potri.017G082300 [exp] 110 / 1e-25 AT5G39785 462 / 1e-153 Protein of unknown function (DUF1666) (.1), Protein of unknown function (DUF1666) (.2) Potri.004G126800 [exp] 98 / 1e-21 AT5G39785 462 / 2e-154 Protein of unknown function (DUF1666) (.1), Protein of unknown function (DUF1666) (.2) Potri.017G084200 [exp] 92 / 1e-19 AT3G01175 140 / 1e-36 Protein of unknown function (DUF1666) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF07891 [flax] [poplar] DUF1666 Protein of unknown function (DUF1666)
Representative CDS sequence Show only first row Show all	>Lus10034809 pacid=23142160 polypeptide=Lus10034809 locus=Lus10034809.g ID=Lus10034809.BGIv1.0 annot-version=v1.0 ATGGATCTGTTCAAAGTGAGGAAGTTCAGAAGAGCTCACAAACCAGAACCAGAAAAGGAACCAGAGGACAAGCCTGTTCCAATCCTACAAGAGCCTAAGA AAGACTCTGATGATTTGAGTTACAACAAGAACAAATCAACTGAAAATGTTGCTGCAGAAGGAGATGCAGAGGACGATGACGACGACTTCATAACCAATGA AGTGAAGAGGAGATTAAAGGAGCTGAGAAGGAACAGCTTCATGGTGTTGATTCCGGAGGAAGAGTCTTTCCCTGAGGAAGAAGAAGAAGAGGAGGATGCA GAAGGAAGGGCGGAGGAGACCATCTGTGGGGAATGGAGAGATGTTGAAGCTCAAGGAAGGCAATGGTGGGGTGGCTTTGATGCTGTTTATGATAAGTACT GCGACAGAATGCTCTTCTTCGATCGTATGAGCCTCCTCCAGGTTAATGAAAATGGTTGTTATATGCCTACTACTCCGTCCCCAAAGTCATTGTCGAAGAA GCTACCATCTCCCTTCCGTTGCCTATCGATGAAAAGGATGGAGGAACCTGAGGACGAAACCGAGCATCTGCAGCAGCCGATGAATGACTCGTACCAAGAT CTCGAGACAGCGTACGTGGCGCAGATGTGCTTGACTTGGGAGGCACTCCATTGCCAATACACTCAACTGTGTCAGAGAATTTCATGCCAGCCTGAGAACC CCACATGTTACAATCACAGTGCTCAGCTGTTTCAACAGTTTCAAGTTCTGTTGCAACGGTTCATCGAGAACGAGCCCTTCGAGCAAGGTTTTAGAGCTGA GGTGTTTGCCCGTTTGAGGAGGGTTTTGCCAAGACTGCTCCAGGCTCCAAATGTAAAAGGCAAGTTGCATCTATTTGGTTCGGATACAAAAGAGGTGGAA GAGCTAGAATCGGATTCGAGGGTACATGCCCCCGATCTCATTCGAGTTATAGAGAGTTCGATTCTTACTTTCCAAATTTTCGTCAAGATGGAAAAGAAAA AGCAGAATGCTGTGATTACGTTGTTTGGGAACCAGAATCAGATTGCAACACCTCTTCAACTGATCCGGTCTTCAATAGACAAGAAAAAGGCGAGGCTGAA GGAACTATGTAAGAAGAGTAAAGGATGGAAGAAGAAATCATGGCCCGAAAGGTACGAGGACGTTCAGCTATTATTCGGGCTCATTGACATAAAAATCATA TGTCGAGTACTTAGGATGGTGAGGATCAGTAAAGAACAGTTGATTTGGTGCGAGGACAAGATGAAGAAACTGAACTTGGCAGAAAATAAGCTGGTGAGAG ATCCATCTCCAATCCTGTTCCCTTGCTAG
AA sequence Show only first row Show all	>Lus10034809 pacid=23142160 polypeptide=Lus10034809 locus=Lus10034809.g ID=Lus10034809.BGIv1.0 annot-version=v1.0 MDLFKVRKFRRAHKPEPEKEPEDKPVPILQEPKKDSDDLSYNKNKSTENVAAEGDAEDDDDDFITNEVKRRLKELRRNSFMVLIPEEESFPEEEEEEEDA EGRAEETICGEWRDVEAQGRQWWGGFDAVYDKYCDRMLFFDRMSLLQVNENGCYMPTTPSPKSLSKKLPSPFRCLSMKRMEEPEDETEHLQQPMNDSYQD LETAYVAQMCLTWEALHCQYTQLCQRISCQPENPTCYNHSAQLFQQFQVLLQRFIENEPFEQGFRAEVFARLRRVLPRLLQAPNVKGKLHLFGSDTKEVE ELESDSRVHAPDLIRVIESSILTFQIFVKMEKKKQNAVITLFGNQNQIATPLQLIRSSIDKKKARLKELCKKSKGWKKKSWPERYEDVQLLFGLIDIKII CRVLRMVRISKEQLIWCEDKMKKLNLAENKLVRDPSPILFPC

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G20260			Protein of unknown function (D...		Lus10034809 [exp]	0	1
AT1G23000			Heavy metal transport/detoxifi...		Lus10032445 [exp]	1.7	0.9522
AT1G15320			unknown protein		Lus10035916 [exp]	2.4	0.9269
AT5G08180			Ribosomal protein L7Ae/L30e/S1...		Lus10040161 [exp]	4.0	0.9241
AT3G53730			Histone superfamily protein (....		Lus10005896 [exp]	5.0	0.9273
AT5G27650			Tudor/PWWP/MBT superfamily pro...		Lus10043114 [exp]	5.7	0.8804
AT3G54560		HTA11	histone H2A 11 (.1)		Lus10018753 [exp]	5.7	0.9351
AT3G45980		H2B, HTB9	HISTONE H2B, Histone superfami...		Lus10013544 [exp]	6.2	0.9340
AT5G59970			Histone superfamily protein (....		Lus10028464 [exp]	6.6	0.9304
AT3G44750		HDT1, HDA3, ATH...	HISTONE DEACETYLASE 2A, histon...		Lus10003376 [exp]	7.1	0.8640
AT3G53730			Histone superfamily protein (....		Lus10023331 [exp]	8.8	0.9262

Compare expression of checked genes

Lus10034809 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.