Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G50430 672 / 0 ST7R, PA, LE, 7RED, DWF5 PARVA, LEPIDA, DWARF 5, DELTA5,7-STEROL DELTA7 REDUCTASE, Ergosterol biosynthesis ERG4/ERG24 family (.1.2) AT3G52940 118 / 1e-28 ELL1, HYD2, FK FACKEL, EXTRA-LONG-LIFESPAN 1, Ergosterol biosynthesis ERG4/ERG24 family (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10033356 [exp] 783 / 0 AT1G50430 751 / 0.0 PARVA, LEPIDA, DWARF 5, DELTA5,7-STEROL DELTA7 REDUCTASE, Ergosterol biosynthesis ERG4/ERG24 family (.1.2) Lus10035723 [exp] 746 / 0 AT1G50430 759 / 0.0 PARVA, LEPIDA, DWARF 5, DELTA5,7-STEROL DELTA7 REDUCTASE, Ergosterol biosynthesis ERG4/ERG24 family (.1.2) Lus10037309 [exp] 534 / 0 AT1G50430 489 / 2e-173 PARVA, LEPIDA, DWARF 5, DELTA5,7-STEROL DELTA7 REDUCTASE, Ergosterol biosynthesis ERG4/ERG24 family (.1.2) Lus10003377 [exp] 105 / 4e-24 AT3G52940 581 / 0.0 FACKEL, EXTRA-LONG-LIFESPAN 1, Ergosterol biosynthesis ERG4/ERG24 family (.1.2) Lus10033358 [exp] 87 / 5e-19 ND 57 / 1e-09 Lus10033357 [exp] 62 / 3e-11 AT5G09530 61 / 1e-11 proline-rich protein 10, Pro-Glu-Leu|Ile|Val-Pro-Lys 1, hydroxyproline-rich glycoprotein family protein (.1) Lus10003550 [exp] 60 / 4e-10 ND 51 / 1e-08 Lus10033359 [exp] 57 / 3e-09 ND 54 / 6e-09 Lus10034812 [exp] 56 / 3e-09 ND 51 / 7e-09
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G253200 [exp] 703 / 0 AT1G50430 764 / 0.0 PARVA, LEPIDA, DWARF 5, DELTA5,7-STEROL DELTA7 REDUCTASE, Ergosterol biosynthesis ERG4/ERG24 family (.1.2) Potri.008G005200 [exp] 695 / 0 AT1G50430 753 / 0.0 PARVA, LEPIDA, DWARF 5, DELTA5,7-STEROL DELTA7 REDUCTASE, Ergosterol biosynthesis ERG4/ERG24 family (.1.2) Potri.006G116200 [exp] 120 / 2e-29 AT3G52940 508 / 0.0 FACKEL, EXTRA-LONG-LIFESPAN 1, Ergosterol biosynthesis ERG4/ERG24 family (.1.2) Potri.010G253301 [exp] 67 / 2e-13 AT1G50430 49 / 6e-08 PARVA, LEPIDA, DWARF 5, DELTA5,7-STEROL DELTA7 REDUCTASE, Ergosterol biosynthesis ERG4/ERG24 family (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0115 [flax] [poplar] Steroid_dh PF01222 [flax] [poplar] ERG4_ERG24 Ergosterol biosynthesis ERG4/ERG24 family
Representative CDS sequence Show only first row Show all	>Lus10034811 pacid=23142272 polypeptide=Lus10034811 locus=Lus10034811.g ID=Lus10034811.BGIv1.0 annot-version=v1.0 ATGGTGGAATCAAATATAGTTCATTCCCCTCTCGTCACTTACGTCTCCGTCGTCTCCCTCCTTTCTCTCTGTCCTCCTTTCGTCATTCTCCTATGGTATA CGATGGTGCACTCTGATGGTTCAATATCCCAAACTTGGGATTATCTGACTCAAACTGGGCTGAAGGGACTCATTGAAATATGGCCAAAACCAACTGCTAC TGCCTGGAAAATAATTGGTTGCTATGCTGCATTTGAGGCTGCACTCCAGCTTCTCTTACCTGGAAAAACAGTTGAAGGTCCAATTTCTCCAAAGGGAAAC CGACCTGTTTACAAGGCAAATGGTGTGCTCGCATATGCAGTGACAATGGTTACATATGTTGGCATATGGTGGTTTGGGATATTCAACGCTGCAATGGTGT ATGATCATTTAGGGGAAATGTTCTCAGCTCTCATTTTTGGAAGCTTAATCTTCTGCGTTTTCCTGTATATTAAAGGTCATGTGGCACCATCATCTACTGA TTCTGGCTCCCTTGGGAACATAATAATTGATTTCTACTGGGGCATGGAGCTGTACCCTCGAATTGGCAAGAACTTTGACATCAAAGTTTTCACGAACTGC AGGTTTGGGATGATGGCTTGGGCAGTTCTTGCATTGACCTACTGTTTTAAACAGTATGAGCTCTATGGAAAAGTGGCTGATTCCTTACTGGTAAATACTA TACTGATGCTCGTGTATATCACAAAGTTTTTCTGGTGGGAGGCTGGGTATTGGAATACAATGGACATTGCCCATGATCGAGCTGGCTTTTATATCTGTTG GGGATGCTTGGTGTGGGTCCCCTCTGTATATACTTCCCCTGGCATGTACCTAGTCAACCATCCTGTAAACCTTGGATCTCAGCTTGCGCTTTTCATATTG GCTGCTGGCATTGCCTGCATATATGTGAACTATGATTGTGACAGGCAAAGGCAGGAATTCCGCAGGACAAATGGAAAGTGTTTAGTTTGGAGAAAGCCTC CTACAAAGATTGTGGCTTCTTATACTACCACTACTGGGGAGACTAAATCAAGCCTTCTCTTAACATCAGGATGGTGGGGCTTGGCTCGGCATTTTCACTA TGCTCCTGAAATATCAGCTGCCTTTTTTTGGTCTCTCCCGGCACTTTTCAGTCATGTGAGCATCAATGCCTTGGACACGGTTGTGCTAGTTATGCGAATG AATAATCTTCCTATACCTAATATACTGTTGCATATGCAGTTTATACCTTACTTCTATGTTATATTTCTCACCATCCTTCTTGTGGACCGAGCTACACGGG ATGATGATCGTTGTCGTTCAAAGTATGGAAAATACTGGAAGCGCTACTGCGACAAGCTGCTTGGTGGTGGGGCGAGGAAAGGAATGGTAGGGATGGAGGG CATGGGAGGCAAAGTTGCTTTGGGGATGGTTGGCAATGGCCCGGCAGGGATGCTTGGGAGTGGGGGCAGTGTAGGTTTAGGGAGAGTAGGTTGGGCTGGC TGGGGAAGAGTAGGCATCGCGGTGGGCATTGGTGGCAATGTTGGCAGTGTTGGCTTTGGGAGAGATGGAATTGCGGTGGGCATCGGTGGCAACGTTGGCT TTGGGAGAGATGGAATTGTGGCGGGCATCGGTGGCAATGTTGGGAGAGATGGAATTGTGGTGGGGATTGTTGGCAATGTAGGAAGAGTTGGCTGGGGGAG AGCCGGGATGGTGGTAGGGAACGGTGGCAGCGTTGGCAACTGGAGGAGATGGCGAGCTAGGCCAACATTGAAGCTTGAGAATGCAAAGGTGGCGATGAAG AGGCCAAGTACGAATCTGTTGAAAGAGGCCATGGTCAGTAGGATGTCGAGAGTGCTGCTTCTGGTTGTGTGTTGTAAGTTTAGGGATGAGGAAAATGGTG GTGGGGAGTTGATGTTTTTATATTGGATTTCGCGGTAG
AA sequence Show only first row Show all	>Lus10034811 pacid=23142272 polypeptide=Lus10034811 locus=Lus10034811.g ID=Lus10034811.BGIv1.0 annot-version=v1.0 MVESNIVHSPLVTYVSVVSLLSLCPPFVILLWYTMVHSDGSISQTWDYLTQTGLKGLIEIWPKPTATAWKIIGCYAAFEAALQLLLPGKTVEGPISPKGN RPVYKANGVLAYAVTMVTYVGIWWFGIFNAAMVYDHLGEMFSALIFGSLIFCVFLYIKGHVAPSSTDSGSLGNIIIDFYWGMELYPRIGKNFDIKVFTNC RFGMMAWAVLALTYCFKQYELYGKVADSLLVNTILMLVYITKFFWWEAGYWNTMDIAHDRAGFYICWGCLVWVPSVYTSPGMYLVNHPVNLGSQLALFIL AAGIACIYVNYDCDRQRQEFRRTNGKCLVWRKPPTKIVASYTTTTGETKSSLLLTSGWWGLARHFHYAPEISAAFFWSLPALFSHVSINALDTVVLVMRM NNLPIPNILLHMQFIPYFYVIFLTILLVDRATRDDDRCRSKYGKYWKRYCDKLLGGGARKGMVGMEGMGGKVALGMVGNGPAGMLGSGGSVGLGRVGWAG WGRVGIAVGIGGNVGSVGFGRDGIAVGIGGNVGFGRDGIVAGIGGNVGRDGIVVGIVGNVGRVGWGRAGMVVGNGGSVGNWRRWRARPTLKLENAKVAMK RPSTNLLKEAMVSRMSRVLLLVVCCKFRDEENGGGELMFLYWISR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G50430		ST7R, PA, LE, 7...	PARVA, LEPIDA, DWARF 5, DELTA5...		Lus10034811 [exp]	0	1
AT1G64000	WRKY	ATWRKY56, WRKY5...	WRKY DNA-binding protein 56 (....		Lus10036401 [exp]	1.4	0.9617
AT3G08680			Leucine-rich repeat protein ki...		Lus10025210 [exp]	4.7	0.9438
AT2G48140		EDA4	embryo sac development arrest ...		Lus10014683 [exp]	7.1	0.9376
AT5G58860		CYP86A1	"cytochrome P450, family 86, s...		Lus10018217 [exp]	7.4	0.9363
					Lus10033359 [exp]	7.5	0.9375
					Lus10003550 [exp]	8.8	0.9342
AT1G74460			GDSL-like Lipase/Acylhydrolase...		Lus10019095 [exp]	8.8	0.9332
AT1G68850			Peroxidase superfamily protein...		Lus10013065 [exp]	10.2	0.9323
AT5G14230			unknown protein		Lus10036990 [exp]	12.4	0.9202
AT2G40370		LAC5	laccase 5 (.1)		Lus10017427 [exp]	13.0	0.8461

Compare expression of checked genes

Lus10034811 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.