Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10003550 [exp] 94 / 5e-25 ND 51 / 1e-08 Lus10033357 [exp] 89 / 4e-23 AT5G09530 61 / 1e-11 proline-rich protein 10, Pro-Glu-Leu|Ile|Val-Pro-Lys 1, hydroxyproline-rich glycoprotein family protein (.1) Lus10033358 [exp] 89 / 1e-22 ND 57 / 1e-09 Lus10033897 [exp] 83 / 3e-21 ND 51 / 4e-09 Lus10033898 [exp] 80 / 3e-20 AT5G09530 52 / 1e-09 proline-rich protein 10, Pro-Glu-Leu|Ile|Val-Pro-Lys 1, hydroxyproline-rich glycoprotein family protein (.1) Lus10033359 [exp] 79 / 3e-19 ND 54 / 6e-09 Lus10033360 [exp] 69 / 8e-16 AT4G38080 49 / 5e-08 hydroxyproline-rich glycoprotein family protein (.1) Lus10034811 [exp] 69 / 2e-14 AT1G50430 724 / 0.0 PARVA, LEPIDA, DWARF 5, DELTA5,7-STEROL DELTA7 REDUCTASE, Ergosterol biosynthesis ERG4/ERG24 family (.1.2) Lus10034813 [exp] 55 / 2e-10 AT5G09520 50 / 1e-08 Pro-Glu-Leu|Ile|Val-Pro-Lys 2, hydroxyproline-rich glycoprotein family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G111566 [exp] 42 / 8e-06 ND / Potri.017G047400 [exp] 37 / 0.0008 ND /
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10034812 pacid=23142233 polypeptide=Lus10034812 locus=Lus10034812.g ID=Lus10034812.BGIv1.0 annot-version=v1.0 ATGGAGGGCATGGGAGGCAAAGTTGCTTTGGGGATGCTTGGGAGTGGGGGCAGTGTAGTAATTGTAGGGAGAGTAGGTTGTGGGAGAGTTGGAATAGTTG GCATTGGCGGCAATGTTGGCTGGGGAAGGGTAGGCATGGTAGTGGGCATTGGCGGCAACGATGGCAGTGCTGGCTTTGGGAGAGATGGAATTGCGGTGGG CATCGGTGGCAATGTTGGTAGAGTTGGCTGGGGGAGAGCTGGGATGGTGGTAGGAATCGGTGGTAGCGATGGCAACTGTAGGAGATGGCGAGCGGCTAGG CCAACATTGAAGCTCGAGAATGCGAAAGTGGCGATGAAGAGACCAAGTACGAATCCGTTGAAAGAAGCCATATATGGTTCAGTGAATGATGATATGTAA
AA sequence Show only first row Show all	>Lus10034812 pacid=23142233 polypeptide=Lus10034812 locus=Lus10034812.g ID=Lus10034812.BGIv1.0 annot-version=v1.0 MEGMGGKVALGMLGSGGSVVIVGRVGCGRVGIVGIGGNVGWGRVGMVVGIGGNDGSAGFGRDGIAVGIGGNVGRVGWGRAGMVVGIGGSDGNCRRWRAAR PTLKLENAKVAMKRPSTNPLKEAIYGSVNDDM

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10034812 [exp]	0	1
AT1G49960			Xanthine/uracil permease famil...		Lus10033773 [exp]	1.0	0.9815
AT5G07475			Cupredoxin superfamily protein...		Lus10012085 [exp]	2.0	0.9811
AT2G36290			alpha/beta-Hydrolases superfam...		Lus10028860 [exp]	3.5	0.9622
AT4G24130			Protein of unknown function, D...		Lus10017330 [exp]	4.6	0.9664
					Lus10033897 [exp]	4.6	0.9617
					Lus10033359 [exp]	4.9	0.9642
AT4G02830			unknown protein		Lus10042573 [exp]	5.0	0.9632
AT1G03700			Uncharacterised protein family...		Lus10011179 [exp]	5.7	0.9616
AT5G55180			O-Glycosyl hydrolases family 1...		Lus10040600 [exp]	6.2	0.9496
AT3G07970		QRT2	QUARTET 2, Pectin lyase-like s...		Lus10019711 [exp]	6.5	0.9483

Compare expression of checked genes

Lus10034812 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.