Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G21380 144 / 1e-37 ARK3 receptor kinase 3 (.1) AT4G27290 132 / 2e-33 S-locus lectin protein kinase family protein (.1) AT1G61480 127 / 1e-31 S-locus lectin protein kinase family protein (.1) AT1G61500 125 / 6e-31 S-locus lectin protein kinase family protein (.1) AT1G11340 125 / 6e-31 S-locus lectin protein kinase family protein (.1) AT1G11330 124 / 9e-31 S-locus lectin protein kinase family protein (.1.2) AT1G61390 120 / 1e-29 S-locus lectin protein kinase family protein (.1.2) AT1G61420 118 / 8e-29 S-locus lectin protein kinase family protein (.1) AT1G61550 117 / 1e-28 S-locus lectin protein kinase family protein (.1) AT1G61430 116 / 6e-28 S-locus lectin protein kinase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10033365 [exp] 273 / 7e-84 AT4G21380 810 / 0.0 receptor kinase 3 (.1) Lus10016859 [exp] 208 / 6e-61 AT4G27290 626 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10014808 [exp] 199 / 2e-57 AT4G27290 588 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10014810 [exp] 173 / 7e-48 AT4G27290 692 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10038553 [exp] 146 / 3e-38 AT4G27290 899 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10016860 [exp] 142 / 1e-36 AT4G21380 743 / 0.0 receptor kinase 3 (.1) Lus10034637 [exp] 141 / 2e-36 AT1G11340 660 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10016862 [exp] 140 / 5e-36 AT4G27290 702 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10018402 [exp] 140 / 5e-36 AT1G11340 691 / 0.0 S-locus lectin protein kinase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G015800 [exp] 254 / 5e-77 AT4G27290 844 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.010G017450 [exp] 252 / 3e-76 AT4G27290 847 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.001G412400 [exp] 249 / 3e-75 AT4G27290 871 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.010G017600 [exp] 248 / 6e-75 AT4G27290 837 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.010G018200 [exp] 239 / 5e-74 AT4G27290 444 / 4e-148 S-locus lectin protein kinase family protein (.1) Potri.001G412300 [exp] 245 / 6e-74 AT4G27290 886 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.010G018300 [exp] 245 / 1e-73 AT4G27290 841 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.010G017900 [exp] 245 / 1e-73 AT4G27290 835 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.010G018400 [exp] 244 / 3e-73 AT4G27290 847 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.010G020300 [exp] 243 / 4e-73 AT4G27290 832 / 0.0 S-locus lectin protein kinase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00954 [flax] [poplar] S_locus_glycop S-locus glycoprotein domain CL0168 [flax] [poplar] PAN PF08276 [flax] [poplar] PAN_2 PAN-like domain CL0168 [flax] [poplar] PF01453 [flax] [poplar] B_lectin D-mannose binding lectin
Representative CDS sequence Show only first row Show all	>Lus10034815 pacid=23142257 polypeptide=Lus10034815 locus=Lus10034815.g ID=Lus10034815.BGIv1.0 annot-version=v1.0 ATGGTTATTATGATCATCACCCCACTTTCAGCAGCTCTTCTAATTTTCACTCTCTACTTCCATCTCTTATCGTCCGCCTTTGCCGCCGACACCATAACTA CCTCTCAGCCGCTCCTAGACGACGGTAGCACTCTCAATTCCTCCGACGGTATCTACCAGATGGGCTTCTTCACCCCACAAGGCGGCACTAATCCCAACAA CCGCTACTTTGGAATTTGGTACAGAGAAATCCCCGTCATGACTGTCGTTTGGGTAGCCAACCGTAACAAACCCGTCTCCCCCGCCGCCAATTCTTCCACT CCTCCCTCCGCCCTCCTTCAGCTCACCGACGCCAAAATGCTACTCCTCCTTGATCGAGTCAACGGCACCACAATCTGGTCTTCTTCTCCCTCTTCTTCTT CTTCTTCACCAGTCGTCAGTAATCCAGTGGCTCTGCTTCTCAATTCGGGAATCCTGGTGGTCAAACCTCGGGAGGGGGAGGAAAACCTAGACAATTCAAT CTGGCAGAGCTTCGACTGCCCTACCGACACATTTCTCCCCGGAATGAAACTCGGGAGGAACCTAATCACAGGTCTGAACCGTCGGATTACACCCTGGGCA TCTTCTGAGGGAATTTCACCTGCGGGATGGAACTCGGAGGGATGGTCATCACCCCGACCGGTTTCATTCAGAGGTACACGTGGCAAGGGAGCAAACAGGG GGATGATTTACCTGACCGCACAAAACGACAACTGTGATAGGTACGCGCTATGCGGAGCTTACGGGAGCTGCGATATTGAGAGCTCCTCAAGCTGCAGTTG TATTGAAGGGTTTGTTCCCAAGGATCAGAAGGAGTGGGATACAGTGGATTGGAGTAGTGGGTGTGTGAGGAAGACCCAGATGAATTTCTTTGGAGATGGT TTCGTGAAGAATTCCGGAATCAAGATCCCCCAAACGGGGAACTCGTCTTGGTTTAATGTGACCATGACTTTGGAAGAGTGTAAAGAAGCTTGCGCCAAGA ATTGTTCTTGTACAGCTTATTCCAATTTGGACACCCAAAAGGGAAGGAGTGGCTGCTTGATTTGGTTTACTGATTTCTTGAATATCATAGCCTTGTATGA TAATGACAAGGATCTTTACATCAGGATGCCTGCTTCTGATATAGACCAGAGTGGCCTTTTGTGA
AA sequence Show only first row Show all	>Lus10034815 pacid=23142257 polypeptide=Lus10034815 locus=Lus10034815.g ID=Lus10034815.BGIv1.0 annot-version=v1.0 MVIMIITPLSAALLIFTLYFHLLSSAFAADTITTSQPLLDDGSTLNSSDGIYQMGFFTPQGGTNPNNRYFGIWYREIPVMTVVWVANRNKPVSPAANSST PPSALLQLTDAKMLLLLDRVNGTTIWSSSPSSSSSSPVVSNPVALLLNSGILVVKPREGEENLDNSIWQSFDCPTDTFLPGMKLGRNLITGLNRRITPWA SSEGISPAGWNSEGWSSPRPVSFRGTRGKGANRGMIYLTAQNDNCDRYALCGAYGSCDIESSSSCSCIEGFVPKDQKEWDTVDWSSGCVRKTQMNFFGDG FVKNSGIKIPQTGNSSWFNVTMTLEECKEACAKNCSCTAYSNLDTQKGRSGCLIWFTDFLNIIALYDNDKDLYIRMPASDIDQSGLL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G27290			S-locus lectin protein kinase ...		Lus10034815 [exp]	0	1
AT2G24840	MADS	DIA, AGL61	DIANA, AGAMOUS-like 61 (.1)		Lus10030663 [exp]	2.2	0.9286
					Lus10018424 [exp]	3.9	0.8609
AT5G45890		SAG12	senescence-associated gene 12 ...		Lus10032406 [exp]	4.5	0.9076
AT3G09290	C2H2ZnF	TAC1	telomerase activator1 (.1)		Lus10021213 [exp]	4.7	0.9096
AT2G04810			Protein of unknown function (D...		Lus10020538 [exp]	6.0	0.9078
AT5G26830			Threonyl-tRNA synthetase (.1)		Lus10030645 [exp]	7.5	0.8628
AT3G02100			UDP-Glycosyltransferase superf...		Lus10003456 [exp]	7.7	0.9039
AT4G29340		PRF4	profilin 4 (.1)		Lus10012935 [exp]	8.5	0.9039
AT2G31180	MYB	ATMYB14, Myb14a...	ARABIDOPSIS THALIANA MYB DOMAI...		Lus10022021 [exp]	9.2	0.9039
AT2G36780			UDP-Glycosyltransferase superf...		Lus10027739 [exp]	9.5	0.8902

Compare expression of checked genes

Lus10034815 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.