Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G51610 627 / 0 Cation efflux family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10033367 [exp] 821 / 0 AT1G51610 571 / 0.0 Cation efflux family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G251300 [exp] 675 / 0 AT1G51610 615 / 0.0 Cation efflux family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF01545 [flax] [poplar] Cation_efflux Cation efflux family
Representative CDS sequence Show only first row Show all	>Lus10034818 pacid=23142240 polypeptide=Lus10034818 locus=Lus10034818.g ID=Lus10034818.BGIv1.0 annot-version=v1.0 ATGCAAACATCATACAGCCTTCTCTCCCGCCTTCGACGCCCCTACAAGCATTATCCTCCCTTTCGTTTCTCTTCTTCTTCCTCACCTTTTACCTTCCGGG ATTCGGTTTCCCAATCACCAGTATGCTGCCACCGACGCGACGGCAGTACTGAAGCTTGTTCAGAGGAACGTGATTTCGCAAGACCAAAACCTACCCCTTA TTTACCTCCTCCTCCTCCTTCTTCTTCTTCTTCTTCTTCTTCTTCCAATCAGTCTCGCCGTGGGTTCCACTCGTTCGGGTTATCCAGAGTTTCTGTCTCT CTTCCGGGCTTGGTTTCGTCAATCGGTGATCACAAGCACCGGAATTTTCTCCTTGCGGTTCGTGGTCGTGGATTTTTCACGAGGGCAAAGCAAGTTAAGC AGATTGCAATAAGTGATCAGCACAGCCAGCGAGCAGTCACAACAGCACTATGGTGTAACTTTCTTGTCTTTTCTCTCAAGTTTGGGGTGTGGTGGACAAC TTCAAGTCATGTTATGATGGCTGAAGTTGTGCATTCAATTGCTGATTTTGCAAATCAGGCACTTCTTGCTTATGGTCTAAGAAGTTCAAGGCGTGCCCCA GATGCTCTTCATCCTTATGGCTATTCCAAAGAACGGTTCGTGTGGTCCTTGATATCTGCTGTCGGTATTTTTTGCCTGGGTTCTGGCGCTACAATAGTAA ATGGAGTTCAGAACTTGTGGAGTTCGCAGCCCCCTGGAAACATTGAATATGCAGCTTTGGTGCTTGGTGGCTCGTTTATAATTGAAGGTGCTTCCCTTCT TGTCGCCATACAAGCGGTCAAGAAAGGTGCAGCTGCAGAGGGTATGGCCATCCGAGACTATGTATGGCGTGGTCATGATCCCACAGCTGTTGCGGTGATG ACAGAGGATGGTGCTGCAGTAACTGGATTGGTTATCGCCGGAGCTTCATTGGTTGCAGTAAATGTCACCGGGAATCCAATTTATGATCCAATAGGTTCAA TCATAGTTGGGAATCTGTTGGGAATGGTAGCTATTTTCCTCATCCAAAGGAACAGGCATGCTTTGATTGGTAGAGCAATGGATGACAATGATATGGAGAA AGTCCTTCATTTCTTAAAAAACGACCCGGTTGTGGATTCATTATATGATTGCAAAAGTGAGGTGATTGGGCCTGGATTTTTCAGATTTAAGGCAGAAATA GATTTTAATGGAGAGATAGTGGTACAGAATTATCTAAATAGGATGGGACGGAAAGAGTGGGCAAGACAGTTCCGTGATGGTGCAAAGGTCAAGGATGATG CTGCGCTTCTCAAGGTCATGTCCATATATGGTGAGGAGCTGGTGACAGCTCTAGGAAGCGAAGTAGATAGACTTGAAAAAGAGATACAAGAGATCGTCCC TGGCATCCGGCATGTCGATATCGAGGCACACAACCCAATAGAACCCCAATCCACAACCAGTCAATAA
AA sequence Show only first row Show all	>Lus10034818 pacid=23142240 polypeptide=Lus10034818 locus=Lus10034818.g ID=Lus10034818.BGIv1.0 annot-version=v1.0 MQTSYSLLSRLRRPYKHYPPFRFSSSSSPFTFRDSVSQSPVCCHRRDGSTEACSEERDFARPKPTPYLPPPPPSSSSSSSSSNQSRRGFHSFGLSRVSVS LPGLVSSIGDHKHRNFLLAVRGRGFFTRAKQVKQIAISDQHSQRAVTTALWCNFLVFSLKFGVWWTTSSHVMMAEVVHSIADFANQALLAYGLRSSRRAP DALHPYGYSKERFVWSLISAVGIFCLGSGATIVNGVQNLWSSQPPGNIEYAALVLGGSFIIEGASLLVAIQAVKKGAAAEGMAIRDYVWRGHDPTAVAVM TEDGAAVTGLVIAGASLVAVNVTGNPIYDPIGSIIVGNLLGMVAIFLIQRNRHALIGRAMDDNDMEKVLHFLKNDPVVDSLYDCKSEVIGPGFFRFKAEI DFNGEIVVQNYLNRMGRKEWARQFRDGAKVKDDAALLKVMSIYGEELVTALGSEVDRLEKEIQEIVPGIRHVDIEAHNPIEPQSTTSQ

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G51610			Cation efflux family protein (...		Lus10034818 [exp]	0	1
AT4G39680			SAP domain-containing protein ...		Lus10016433 [exp]	1.4	0.8531
AT1G53025			Ubiquitin-conjugating enzyme f...		Lus10028151 [exp]	3.5	0.8194
AT3G52210			S-adenosyl-L-methionine-depend...		Lus10037917 [exp]	4.0	0.8289
AT5G03610			GDSL-like Lipase/Acylhydrolase...		Lus10034139 [exp]	4.9	0.7877
AT1G29350			Kinase-related protein of unkn...		Lus10000188 [exp]	5.9	0.7885
AT3G49430		SRP34A, SR34a, ...	Serine/Arginine-Rich Protein S...		Lus10032940 [exp]	6.3	0.7558
AT1G22460			O-fucosyltransferase family pr...		Lus10008719 [exp]	9.9	0.7629
AT2G01130			DEA(D/H)-box RNA helicase fami...		Lus10007938 [exp]	11.7	0.7919
AT4G36050			endonuclease/exonuclease/phosp...		Lus10028455 [exp]	12.0	0.7617
AT2G19170		SLP3	subtilisin-like serine proteas...		Lus10011018 [exp]	12.4	0.7317

Compare expression of checked genes

Lus10034818 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.