Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G51590 855 / 0 MNS1, MANIB ALPHA-MANNOSIDASE IB, alpha-mannosidase 1 (.1.2) AT3G21160 838 / 0 MNS2, MANIA ALPHA-MANNOSIDASE IA, alpha-mannosidase 2 (.1) AT1G30000 352 / 1e-113 MNS3 alpha-mannosidase 3 (.1) AT1G27520 201 / 5e-57 Glycosyl hydrolase family 47 protein (.1) AT5G43710 198 / 1e-55 Glycosyl hydrolase family 47 protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035727 [exp] 1001 / 0 AT1G51590 877 / 0.0 ALPHA-MANNOSIDASE IB, alpha-mannosidase 1 (.1.2) Lus10037312 [exp] 991 / 0 AT1G51590 865 / 0.0 ALPHA-MANNOSIDASE IB, alpha-mannosidase 1 (.1.2) Lus10033368 [exp] 914 / 0 AT1G51590 747 / 0.0 ALPHA-MANNOSIDASE IB, alpha-mannosidase 1 (.1.2) Lus10042830 [exp] 351 / 1e-113 AT1G30000 846 / 0.0 alpha-mannosidase 3 (.1) Lus10028127 [exp] 236 / 5e-72 AT1G30000 622 / 0.0 alpha-mannosidase 3 (.1) Lus10042143 [exp] 204 / 2e-58 AT1G27520 886 / 0.0 Glycosyl hydrolase family 47 protein (.1) Lus10041170 [exp] 198 / 3e-55 AT5G43710 885 / 0.0 Glycosyl hydrolase family 47 protein (.1) Lus10021888 [exp] 196 / 7e-55 AT5G43710 853 / 0.0 Glycosyl hydrolase family 47 protein (.1) Lus10004233 [exp] 81 / 6e-16 AT1G27520 515 / 0.0 Glycosyl hydrolase family 47 protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G007500 [exp] 928 / 0 AT1G51590 885 / 0.0 ALPHA-MANNOSIDASE IB, alpha-mannosidase 1 (.1.2) Potri.018G141100 [exp] 833 / 0 AT1G51590 813 / 0.0 ALPHA-MANNOSIDASE IB, alpha-mannosidase 1 (.1.2) Potri.004G132300 [exp] 357 / 6e-116 AT1G30000 934 / 0.0 alpha-mannosidase 3 (.1) Potri.015G071400 [exp] 207 / 3e-59 AT1G27520 931 / 0.0 Glycosyl hydrolase family 47 protein (.1) Potri.008G160900 [exp] 201 / 6e-57 AT5G43710 908 / 0.0 Glycosyl hydrolase family 47 protein (.1) Potri.012G076600 [exp] 144 / 3e-36 AT1G27520 657 / 0.0 Glycosyl hydrolase family 47 protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0059 [flax] [poplar] 6_Hairpin PF01532 [flax] [poplar] Glyco_hydro_47 Glycosyl hydrolase family 47
Representative CDS sequence Show only first row Show all	>Lus10034820 pacid=23142205 polypeptide=Lus10034820 locus=Lus10034820.g ID=Lus10034820.BGIv1.0 annot-version=v1.0 ATGGCGAGGAGCAGCAGATCCTCGTCGTCATCTTCCTCGAAATGGAGGTATTGCAACCCTGCTTATTACCTCAAGCGGCCCAAGCGATTGGCTTTCCTCT TCTTTGCCTTCGTTTGCGCCACTCTGCTCGTTTGGGATCGCCACACTCTCGTCCAGGAGCACGAGGTGGAAGTTGAGAAGTTAAATGAAGAACTGAACCA AATAAAATCGATGCTAGAAGAGTTCAAGGGTACTCATGGGGATGAAGTCAGCTCAGTGATTGAGAAATCTTCCAAAGTCACCCCGAAGGTTATTCCTGAG GATCCTGTTGGTATTCACCGAAGAGAGAAAGTGAAAGAAGCCATGATTCATGCTTGGAGTTCGTATGAAAAATATGCATGGGGTCATGATGAACTTCAGC CTCAATCGAAGAATGGTGTTGATAGCTTCGGTGGTCTTGGAGCAACATTAATAGATGCTCTTGATACCTTATATATAATGGGCCTGGATGAGCAGTTCCA AAGAGCTAGAGAGTGGGTTGCAAATTCATTGGATTTCAATAAGGATTATGATGCTAGTGTGTTCGAGACAACCATAAGAGTGGTAGGGGGTCTACTCAGT GCTTACGATCTTTCGGGCGACAAACTTTTCATTGAGAAAGCTAAAGACATTGCTGATAGGTTGTTGCCTGCATGGGATACACCTACTGGCATTCCTTATA ACATTATCAACTTGGAACATGGAAATCCTCACAACCCTGGTTGGACCGGTGGTTCTAGTATTCTTGCAGATTCGGGTACCGAGCAGCTTGAATTTTTTGC TCTCTCTCAAAGGACAGGAGACCCAAAGTACCAACAAAAGGCTGAGAAGGTTATACTGGAGCTCAACAAAACCTTTCCTGCTGATGGCCTTCTACCTATC TATATAAGCCCTGATACGGGAGCTGGAGCAATCTCCACAATAACTTTTGGCGCTATGGGTGACAGCTTTTACGAGTATCTGCTCAAGGTGTGGATTCAAG GAAATAAAACTTCAGCTGTGAAACTTTACAGAGACATGTGGGAAAAATCAATGAAGGGTCTATTAAGCTTGATTAGAAGAAGTACCCCTTCATCTTACAC CTACATTTGTGAAAAGAGTGGTGATTGGTTAACAGACAAGATGGATGAATTAGCATGCTTTGCTCCAGGAATGTTAGCTCTGGGATCAGCTGGCTATGAG CCTGCCGAGTCTAAGAAATTTCTCTCACTCGCAGAGGAGCTTGCTTGGACTTGTTACAACTTCTATCAATCAACACCTACAAAACTGGCTGGAGAGAACT ATTTTTTCCGATCTGGAGAGGATATGAGTGTTGGCACATCATGGAACATAATGAGGCCAGAAACTGTGGAATCGCTCTTTTACTTATGGCGTTTAACCGG GAACAAGACATATCAGGAGTGGGGTTGGAACATATTCCAAGCATTTGAGAAGAACTCACGTGTTGAAGGCGGATATGTTGGACTGAAAGATGTGAACACT GGGATCAAAGACAACATGATGCAGAGCTTTTTCCTAGCGGAGACGCTCAAGTATCTATACCTTCTTTTCTCGCCGTCATCTGTGATCTCGTTGGACGAAT GGGTTTTCAATACGGAAGCTCACCCTTTGAGAATCGTGGCTCGGCAAGATGTGGAGAGTAGTGATAATGGTAAGAGGGAAGACAAAGTAAGTAGGTCACG AGGCAGGAAAGAAGGGCAATGGTGA
AA sequence Show only first row Show all	>Lus10034820 pacid=23142205 polypeptide=Lus10034820 locus=Lus10034820.g ID=Lus10034820.BGIv1.0 annot-version=v1.0 MARSSRSSSSSSSKWRYCNPAYYLKRPKRLAFLFFAFVCATLLVWDRHTLVQEHEVEVEKLNEELNQIKSMLEEFKGTHGDEVSSVIEKSSKVTPKVIPE DPVGIHRREKVKEAMIHAWSSYEKYAWGHDELQPQSKNGVDSFGGLGATLIDALDTLYIMGLDEQFQRAREWVANSLDFNKDYDASVFETTIRVVGGLLS AYDLSGDKLFIEKAKDIADRLLPAWDTPTGIPYNIINLEHGNPHNPGWTGGSSILADSGTEQLEFFALSQRTGDPKYQQKAEKVILELNKTFPADGLLPI YISPDTGAGAISTITFGAMGDSFYEYLLKVWIQGNKTSAVKLYRDMWEKSMKGLLSLIRRSTPSSYTYICEKSGDWLTDKMDELACFAPGMLALGSAGYE PAESKKFLSLAEELAWTCYNFYQSTPTKLAGENYFFRSGEDMSVGTSWNIMRPETVESLFYLWRLTGNKTYQEWGWNIFQAFEKNSRVEGGYVGLKDVNT GIKDNMMQSFFLAETLKYLYLLFSPSSVISLDEWVFNTEAHPLRIVARQDVESSDNGKREDKVSRSRGRKEGQW

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G51590		MNS1, MANIB	ALPHA-MANNOSIDASE IB, alpha-ma...		Lus10034820 [exp]	0	1
AT2G41830			Uncharacterized protein (.1)		Lus10026298 [exp]	1.0	0.8929
AT1G60780		HAP13	HAPLESS 13, Clathrin adaptor c...		Lus10026688 [exp]	1.7	0.8667
AT1G79830		GC5	golgin candidate 5 (.1.2.3.4)		Lus10011437 [exp]	2.0	0.8634
AT1G18470			Transmembrane Fragile-X-F-asso...		Lus10021710 [exp]	3.2	0.8389
AT2G16920		UBC23 ,PFU2	PHO2 FAMILY UBIQUITIN CONJUGAT...		Lus10025070 [exp]	3.5	0.8592
AT4G24550			Clathrin adaptor complexes med...		Lus10024548 [exp]	4.2	0.8408
AT1G73390			Endosomal targeting BRO1-like ...		Lus10031881 [exp]	5.0	0.8147
AT3G54850		ATPUB14	plant U-box 14 (.1)		Lus10038699 [exp]	5.5	0.8347
AT5G19670			Exostosin family protein (.1)		Lus10012973 [exp]	6.3	0.8564
AT2G46180		GC4	golgin candidate 4 (.1)		Lus10041081 [exp]	6.3	0.8671

Compare expression of checked genes

Lus10034820 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.