Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G16840 127 / 4e-38 unknown protein AT1G78890 114 / 5e-33 unknown protein AT2G19180 86 / 1e-21 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037317 [exp] 147 / 1e-45 AT1G16840 133 / 4e-40 unknown protein Lus10035733 [exp] 146 / 2e-45 AT1G16840 130 / 9e-39 unknown protein Lus10033369 [exp] 140 / 2e-43 AT1G16840 119 / 3e-35 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G005900 [exp] 144 / 6e-45 AT1G16840 142 / 8e-44 unknown protein Potri.010G252800 [exp] 143 / 1e-43 AT1G16840 146 / 8e-45 unknown protein Potri.018G142900 [exp] 86 / 2e-21 AT2G19180 80 / 3e-18 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10034821 pacid=23142314 polypeptide=Lus10034821 locus=Lus10034821.g ID=Lus10034821.BGIv1.0 annot-version=v1.0 ATGGCTCGCACTCTTTCCTTCTACCTCGCGTCGGCCGCAGTATCCAGATCTTCCTCCGCCTCCTTCCGCTGCCTCGCCCTCCGATCGCACTCCAACCTTC CCAACAGCAACGCCGCCGCCGATCCTGCCTCCGCCGATGAATCCTCCACTGATCCTCTCCTCAGGAAGCTCGAGGACGCCATCCACCGCATCATCGTCCG CCGTGCTGCACCTGATTGGCTCCCTTTTGTCCCCGGATCCTCCTACTGGGTCCCTCCTCCTAGATCTAACGCTGGCTCCTACGGTATCGTCCAGCTCGTC GAGAAGCTCGCCAATCCCTTGATCGATGAGGAAGCCCTCTCTGTTACCACCGTCCGCGGCTGGCCTTCCTCCGATTATTTTATCAAAGGTATCCAATATT CTACCAATAATCGTTTTGGATCCGGTTTGGATCCTGTTTAG
AA sequence Show only first row Show all	>Lus10034821 pacid=23142314 polypeptide=Lus10034821 locus=Lus10034821.g ID=Lus10034821.BGIv1.0 annot-version=v1.0 MARTLSFYLASAAVSRSSSASFRCLALRSHSNLPNSNAAADPASADESSTDPLLRKLEDAIHRIIVRRAAPDWLPFVPGSSYWVPPPRSNAGSYGIVQLV EKLANPLIDEEALSVTTVRGWPSSDYFIKGIQYSTNNRFGSGLDPV

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G16840			unknown protein		Lus10034821 [exp]	0	1
AT1G16840			unknown protein		Lus10033369 [exp]	3.0	0.7533
AT1G16840			unknown protein		Lus10037317 [exp]	3.7	0.7390
AT1G43700	bZIP	SUE3, AtbZIP51,...	sulphate utilization efficienc...		Lus10042802 [exp]	6.7	0.7247
AT5G27280			Zim17-type zinc finger protein...		Lus10021838 [exp]	9.8	0.7189
AT3G52820		ATPAP22, PAP22	purple acid phosphatase 22 (.1...		Lus10021377 [exp]	11.2	0.6765
AT5G13090			unknown protein		Lus10011343 [exp]	12.2	0.6547
AT4G33940			RING/U-box superfamily protein...		Lus10027921 [exp]	14.7	0.6417
AT3G56360			unknown protein		Lus10029031 [exp]	25.2	0.7121
AT1G43700	bZIP	SUE3, AtbZIP51,...	sulphate utilization efficienc...		Lus10029773 [exp]	26.5	0.6742
AT3G26100			Regulator of chromosome conden...		Lus10011399 [exp]	30.4	0.6567

Compare expression of checked genes

Lus10034821 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.