Plant FIBer expression Database

Lus10034822 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT3G23940 967 / 0 dehydratase family (.1.2)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10033370
[exp]
1151 / 0 AT3G23940 1013 / 0.0 dehydratase family (.1.2)
Lus10032616
[exp]
1115 / 0 AT3G23940 1162 / 0.0 dehydratase family (.1.2)
Lus10043132
[exp]
1091 / 0 AT3G23940 1148 / 0.0 dehydratase family (.1.2)
Lus10032617
[exp]
143 / 8e-41 AT3G23940 139 / 5e-40 dehydratase family (.1.2)
Lus10043131
[exp]
126 / 8e-34 AT3G23940 139 / 6e-39 dehydratase family (.1.2)
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.003G176600
[exp]
1030 / 0 AT3G23940 1011 / 0.0 dehydratase family (.1.2)
Potri.001G051700
[exp]
1025 / 0 AT3G23940 960 / 0.0 dehydratase family (.1.2)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
PF00920 ILVD_EDD Dehydratase family
Representative CDS sequence
>Lus10034822 pacid=23142208 polypeptide=Lus10034822 locus=Lus10034822.g ID=Lus10034822.BGIv1.0 annot-version=v1.0
ATGCTATCAACCTTCGTTTCTCCATGCCCCTCGCCGTCATTCCCGCTTTCGGCGCCTACTACTCGGCACCTTGGAACCTCCCTCCGAGTAGCAGCTCAGT
CACAGCCCGCCGCCGTCTCGCCGCCGCCGCCGGCCGCCATCTTCACAGAGAAAAAACTCAATAAATACAGCTCCCAAGTTACAGAGCCCAAGTCTCAGGG
TGGATCCCAAGCCGTCCTCTATGGAGTAGGGCTATCGGACGATGACTTGACCAAGCCTCAGGTAGGCATTTCCTCGGTCTGGTACGAAGGGAACACTTGC
AATATGCACTTGTTGAAGCTCTCCGAGGCAGTGAAGCAAGGGGTTCAGGAGGCCGGAATGGTCGGATTCAGGTTTAATACCATCGGCGTCAGCGATGCTA
TCTCTATGGGGACGAGAGGGATGTGTTACAGCTTGCAGAGTAGGGACTTGATTGCTGATAGTATTGAGACTGTTATGAGTGCTCAGTGGTATGATGCCAA
CATCTCAATTCCCGGCTGTGATAAGAATATGCCAGGAACAATTATTGCAATGGGAAGGCTTAACCGGCCTAGTATCATGGTCTATGGTGGATCTATAAAG
CCTGGACATGTGAATGGTCATACCTACGATATAGTATCTGCATTTCAGGTTTATGGAGAGTATCTAAGTGGAGCTATAACAGATGACCATCGCCGAGAAG
TTTTACAGAACTCGTGTCCTGGGGCTGGTGCCTGTGGTGGAATGTATACTGCAAATACAATGGCTTCTGCTATTGAAGCCATGGGAATGTCTCTTCCATA
CAGCTCTTCGCTACCCGCTGAAAGTGATTTGAAGCTGGATGAATGTCGTTTGGCTGGAAAGTACCTTCTAGAGTTGGTTAAGATGGACTTGAAACCACGA
GACATCATCACTCCTACATCATTACGCAATGCAATGGTTACTGTCATGGCACTAGGTGGATCTACCAATGCTGTGTTGCACTTAATTGCTATTGCAAGGT
CTGTTGGTTTGGACCTTACACTTGATGACTTCCAGAAGGTTAGTGATGAGATCCCATTCCTGGCTGATCTCAAACCTAGTGGCAAGTATGTTATGGAGGA
TGTTCACAAGATTGGAGGAACACCTGCAGTGCTTCGCTATCTGTTGGAACTGGGTTTCCTTGATGGAGATTCTTTGACTGTGACCGGGAAGACGCTGGGT
GAAAATCTGGCAGACTGCCCTCCTTTGTCAGATGGTCAGGAAATTATAAAGCCTGTGGACAACCCCATCAAGAAGACTGGTCATCTCCAAATATTGCGTG
GGAATCTCGCACCTGATGGTTCCGTGGCAAAAATTACTGGAAAGGAAGGACTTTATTTCTCTGGTCCTGCACTTGTGTTTGAAGGAGAGGAATCTATGAT
GAAAGCCATTTCTGAGGATCCTATGAGTTTTAAAGGGAAAGTGGTGGCCATTAGAGGAGAGGGACCAAAGGGTGGTCCTGGCATGCCGGAGATGCTAACA
CCAACAAGTGCGATTATGGGAGCTGGGCTTGGGAAGGATTGTGCATTGTTGACCGACGGGAGATTTTCAGGAGGTTCACATGGATTCGTGGTTGGCCATA
TATGCCCTGAAGCACAGGAAGGTGGTCCCATTGGTTTGATTAGAAACGGAGACATAATCACCATAGATGTCAGAGAAAGGAGAATAGATGTTCAGCTTAC
GGATGCGGAAATGGAAGAGAGGAGAAAGAGTTGGACTCCGCCATCATACAAAGCCACCCGTGGGGTGCTCTACAAGTATATCAAGAACGTTCAATCAGCT
TCAAAAGGCTGCGTCACAGATGAGTAA
AA sequence
>Lus10034822 pacid=23142208 polypeptide=Lus10034822 locus=Lus10034822.g ID=Lus10034822.BGIv1.0 annot-version=v1.0
MLSTFVSPCPSPSFPLSAPTTRHLGTSLRVAAQSQPAAVSPPPPAAIFTEKKLNKYSSQVTEPKSQGGSQAVLYGVGLSDDDLTKPQVGISSVWYEGNTC
NMHLLKLSEAVKQGVQEAGMVGFRFNTIGVSDAISMGTRGMCYSLQSRDLIADSIETVMSAQWYDANISIPGCDKNMPGTIIAMGRLNRPSIMVYGGSIK
PGHVNGHTYDIVSAFQVYGEYLSGAITDDHRREVLQNSCPGAGACGGMYTANTMASAIEAMGMSLPYSSSLPAESDLKLDECRLAGKYLLELVKMDLKPR
DIITPTSLRNAMVTVMALGGSTNAVLHLIAIARSVGLDLTLDDFQKVSDEIPFLADLKPSGKYVMEDVHKIGGTPAVLRYLLELGFLDGDSLTVTGKTLG
ENLADCPPLSDGQEIIKPVDNPIKKTGHLQILRGNLAPDGSVAKITGKEGLYFSGPALVFEGEESMMKAISEDPMSFKGKVVAIRGEGPKGGPGMPEMLT
PTSAIMGAGLGKDCALLTDGRFSGGSHGFVVGHICPEAQEGGPIGLIRNGDIITIDVRERRIDVQLTDAEMEERRKSWTPPSYKATRGVLYKYIKNVQSA
SKGCVTDE

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT3G23940 dehydratase family (.1.2) Lus10034822
[exp]
0 1
AT5G23300 PYRD pyrimidine d (.1) Lus10024096
[exp]
1.4 0.9420
AT4G19710 AK-HSDHII, AK-H... aspartate kinase-homoserine de... Lus10030339
[exp]
1.7 0.9545
AT1G29880 glycyl-tRNA synthetase / glyci... Lus10029203
[exp]
4.6 0.9350
AT5G43500 ATARP9 actin-related protein 9 (.1.2) Lus10022198
[exp]
5.7 0.9350
AT5G16750 TOZ TORMOZEMBRYO DEFECTIVE, Transd... Lus10012706
[exp]
10.4 0.9302
AT2G40770 zinc ion binding;DNA binding;h... Lus10012867
[exp]
11.2 0.9318
AT3G59820 LETM1-like protein (.1.2) Lus10027069
[exp]
11.2 0.9316
AT1G74040 IPMS2, MAML-3, ... SOPROPYLMALATE SYNTHASE 2, 2-i... Lus10019573
[exp]
15.7 0.9230
AT1G03860 ATPHB2 prohibitin 2 (.1.2.3) Lus10042515
[exp]
20.0 0.9347
AT3G57290 ATINT6, ATEIF3E... eukaryotic translation initiat... Lus10018035
[exp]
21.2 0.9301

Lus10034822 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.