Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G15733 67 / 3e-15 SCRL11 SCR-like 11 (.1) AT4G22115 47 / 1e-07 SCRL14 SCR-like 14 (.1) AT4G15735 47 / 2e-07 SCRL10 SCR-like 10 (.1) AT4G22105 45 / 8e-07 SCRL26 SCR-like 26 (.1) AT2G05117 39 / 9e-05 SCRL9 SCR-like 9 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10034824 [exp] 260 / 3e-91 AT4G15733 63 / 9e-14 SCR-like 11 (.1) Lus10033371 [exp] 158 / 3e-51 AT4G15733 71 / 6e-18 SCR-like 11 (.1) Lus10033373 [exp] 145 / 5e-44 ND 64 / 3e-13 Lus10042791 [exp] 127 / 5e-39 AT4G15733 65 / 2e-15 SCR-like 11 (.1) Lus10029762 [exp] 103 / 6e-30 AT4G15733 60 / 1e-13 SCR-like 11 (.1) Lus10010504 [exp] 90 / 2e-24 AT4G22115 42 / 1e-06 SCR-like 14 (.1) Lus10038705 [exp] 68 / 1e-14 ND / Lus10010234 [exp] 67 / 2e-14 ND / Lus10012486 [exp] 64 / 5e-13 ND /
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G162300 [exp] 72 / 2e-17 AT4G15733 57 / 3e-12 SCR-like 11 (.1) Potri.004G201100 [exp] 64 / 2e-14 AT4G15733 50 / 8e-10 SCR-like 11 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0054 [flax] [poplar] Knottin_1 PF06876 [flax] [poplar] SCRL Plant self-incompatibility response (SCRL) protein
Representative CDS sequence Show only first row Show all	>Lus10034823 pacid=23142283 polypeptide=Lus10034823 locus=Lus10034823.g ID=Lus10034823.BGIv1.0 annot-version=v1.0 ATGGCGAAGCTTGCAATCATGTCAATTTTCGTTTGCCTCGTTCTCTTTCAGTTTGCTGCTGCATCTCAAGAAGATGAGCTTAAATGGTGCCCAAAGACGG ACGTATTCATTGGAGGGTGCGGAGGGCCACAACAAGAGCAATGTCTTTTGGATTTTCTGGGAAAGTATGGAGCTAGCAGCATGCCTAGAAATTGCAGATG CACCCCTGCTGGCGCTAAACATTCTTGTATGACCAAAGCTGCTGAGAATCAGAACAAGCTCCACCGCTTCCTCAACTACATGATGGCTCACTCCATAACT AGTCGGGCGGAGAGCATCAGTGCCGTCACCCTCCAAAAGCTAGCTCTATTGTATGCCTATGTGGTGAGGGAGCTGATCCACCTCATGCACCTCTTGGCTC TCACCCTTCGGGCATTTTAG
AA sequence Show only first row Show all	>Lus10034823 pacid=23142283 polypeptide=Lus10034823 locus=Lus10034823.g ID=Lus10034823.BGIv1.0 annot-version=v1.0 MAKLAIMSIFVCLVLFQFAAASQEDELKWCPKTDVFIGGCGGPQQEQCLLDFLGKYGASSMPRNCRCTPAGAKHSCMTKAAENQNKLHRFLNYMMAHSIT SRAESISAVTLQKLALLYAYVVRELIHLMHLLALTLRAF

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G15733		SCRL11	SCR-like 11 (.1)		Lus10034823 [exp]	0	1

Compare expression of checked genes

Lus10034823 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.