Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G16860 608 / 0 Ubiquitin-specific protease family C19-related protein (.1) AT1G78880 602 / 0 Ubiquitin-specific protease family C19-related protein (.1) AT4G22290 355 / 3e-117 Ubiquitin-specific protease family C19-related protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10033374 [exp] 839 / 0 AT1G16860 702 / 0.0 Ubiquitin-specific protease family C19-related protein (.1) Lus10005996 [exp] 178 / 4e-51 AT1G16860 202 / 2e-61 Ubiquitin-specific protease family C19-related protein (.1) Lus10030215 [exp] 181 / 1e-50 AT1G78880 195 / 3e-57 Ubiquitin-specific protease family C19-related protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G006100 [exp] 754 / 0 AT1G16860 714 / 0.0 Ubiquitin-specific protease family C19-related protein (.1) Potri.010G252000 [exp] 751 / 0 AT1G16860 685 / 0.0 Ubiquitin-specific protease family C19-related protein (.1) Potri.010G252400 [exp] 630 / 0 AT1G16860 647 / 0.0 Ubiquitin-specific protease family C19-related protein (.1) Potri.010G252500 [exp] 629 / 0 AT1G16860 646 / 0.0 Ubiquitin-specific protease family C19-related protein (.1) Potri.008G006000 [exp] 627 / 0 AT1G16860 652 / 0.0 Ubiquitin-specific protease family C19-related protein (.1) Potri.011G022600 [exp] 326 / 3e-106 AT4G22290 451 / 4e-157 Ubiquitin-specific protease family C19-related protein (.1) Potri.004G002000 [exp] 322 / 1e-104 AT4G22290 381 / 1e-129 Ubiquitin-specific protease family C19-related protein (.1) Potri.002G176200 [exp] 207 / 3e-62 AT4G22290 189 / 6e-57 Ubiquitin-specific protease family C19-related protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10034825 pacid=23142155 polypeptide=Lus10034825 locus=Lus10034825.g ID=Lus10034825.BGIv1.0 annot-version=v1.0 ATGGGTTCCCGTTTCCCATCTCATCAGCTCAGCAATGGCCTTTATGTATCTGGTCGGCCTGAGCAGCCGAAGGAAAGAACTCCAACAATGAGCTCTGTGG CCATGCCCTATACAGGCGGTGATATCAAGAAGTCGGGAGAATTAGGAAAGATGTTTGATATTACCATGGAAGGCTCAAAGTCAAGAAAGTCGGGACCGAT AACTGGTGGTGCACCTTCAAGGACAGGATCATTTGGAGGTGCAGCTTCACATTCAGGACCAATCATGCCCAATGCTGCTACTAGGGCTGCTTACACTTCT TCCGGTGCCGTGTCTTCAGGTGGGATGTCTGGTTCAGCTTCAATGAAAAAATCAAATTCTGGACCCCTTAATAAGCATGGTGAACCTCTTAAGAAGTCTT CTGGTCCTCAGTCTGGTGGAGGGACACCTTCTGGTCGTCAAAATTCTGGCCCTCTTCCTCCTATTCTGCCTGCAACTGGCCTCATCACATCCGGGCCAAT TTCTTCAGGGCCACTAAATTCCTCTGGGGCACCTCGCAAGGTGTCTGGTCCCCTGGAATCTATGGGATCAATGAAGGTTCCCAGTTCTGGTGTTATTCAT AATCAGGCTATCTCTATTCTCAGCCAAGATGATGAGTTTTCGTTCAGAAAGAACTTCGCAAAACCGATATTTCGTTCACTCATTCTACTCTTTGTAATGG GTCTCACTGCTGGTGGATTCATCCTTGGAGCCGTCCACAATGCCATACTTCTTGTCGTGGTTGTGGTTCTGTTTGGTGCTGTTGGTGCATTATTCACATG GAATAATTGTTTCGGGAGAAAAGCTATCATGAGCCATATATCTCAATATCCAGATGCTGAGCTGCGAAATGCTAAAAATGGGCAATTTGTGAAGATCTCT GGGGTTGTTACTTGTGGTAACGTTCCTCTCGAGTCGTCCTTCCAAAGGGTTCCTAGATGTGTATATACATCTACCAGTTTGTATGAGTATCGTGGATGGG ATTCAAAAGCTGCCAATGGTCAACATCGCCGTTTCACTTGGGGGCTCAGATCATTAGAAAGGCGTGCAGTTGACTTCTACATCTCTGACTTCCAATCGGG TTTGAGAGCACTGGTTAAAACTGGCTATGGTGCAAGAGTGACACCCTATGTTGAAGACTCCCTTGTCATTGACATCAATGCAGGTTCTGAGGAACTGTCT CCGGATTTTTCCAGATGGTTGGCTGAAAGGAATCTTTCAAGCGATGATCGGATGATGCGACTAAAAGAAGGATACATCAAAGAAGGAAGCACAGTGAGTG TAATGGGGGTGGTTCAGAGGAATGACAATGTGCTTATGATCCTGCCTTCTACTGAACCTTTCACGACAGGTTGCCAGTGGACAAAGTGTATCTGTCCAGC TAGCCTCGAGGGTATCGTGTTGAGATACTGTCGCCAGGCACTTCCTTTTCCTGCATATTTCTTCATTAATATTGGTGGTGGTTGCAACAGCAACTGGCTT AAGGCAACAAACGGCAGTTCTGGTGGTGCTGGTGGTGCTGGTAATGATAGTGATGGTATTATGAGTGTGATGTTGATTGTAATGATTAGTTGGCGTTGGG AAGAGAGAGATGAAGAAGGCTGGCTTTTGGTTGTTATGGAAGGAAGGGGTCTTGATCTTGATGATGATTTGGTTGTTATGGAAGGAGGGCTTGATGATGA TATTTGTAGGGGTACCACCATGTTTGAGCAGATGATTGCTATTATGGGAGTTTATGTCAAATAG
AA sequence Show only first row Show all	>Lus10034825 pacid=23142155 polypeptide=Lus10034825 locus=Lus10034825.g ID=Lus10034825.BGIv1.0 annot-version=v1.0 MGSRFPSHQLSNGLYVSGRPEQPKERTPTMSSVAMPYTGGDIKKSGELGKMFDITMEGSKSRKSGPITGGAPSRTGSFGGAASHSGPIMPNAATRAAYTS SGAVSSGGMSGSASMKKSNSGPLNKHGEPLKKSSGPQSGGGTPSGRQNSGPLPPILPATGLITSGPISSGPLNSSGAPRKVSGPLESMGSMKVPSSGVIH NQAISILSQDDEFSFRKNFAKPIFRSLILLFVMGLTAGGFILGAVHNAILLVVVVVLFGAVGALFTWNNCFGRKAIMSHISQYPDAELRNAKNGQFVKIS GVVTCGNVPLESSFQRVPRCVYTSTSLYEYRGWDSKAANGQHRRFTWGLRSLERRAVDFYISDFQSGLRALVKTGYGARVTPYVEDSLVIDINAGSEELS PDFSRWLAERNLSSDDRMMRLKEGYIKEGSTVSVMGVVQRNDNVLMILPSTEPFTTGCQWTKCICPASLEGIVLRYCRQALPFPAYFFINIGGGCNSNWL KATNGSSGGAGGAGNDSDGIMSVMLIVMISWRWEERDEEGWLLVVMEGRGLDLDDDLVVMEGGLDDDICRGTTMFEQMIAIMGVYVK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G16860			Ubiquitin-specific protease fa...		Lus10034825 [exp]	0	1
AT1G16860			Ubiquitin-specific protease fa...		Lus10033374 [exp]	1.0	0.9330
AT3G62110			Pectin lyase-like superfamily ...		Lus10038030 [exp]	2.0	0.9118
AT1G80690			PPPDE putative thiol peptidase...		Lus10042454 [exp]	2.4	0.9017
AT3G12110		ACT11	actin-11 (.1)		Lus10016558 [exp]	5.5	0.9030
AT2G20840			Secretory carrier membrane pro...		Lus10039794 [exp]	7.1	0.9111
AT2G20840			Secretory carrier membrane pro...		Lus10018562 [exp]	8.7	0.9038
AT5G16730			Plant protein of unknown funct...		Lus10009550 [exp]	9.5	0.8960
AT5G23860		TUB8, b-TUB	tubulin beta 8 (.1.2)		Lus10027476 [exp]	11.2	0.8938
AT5G07620			Protein kinase superfamily pro...		Lus10032493 [exp]	11.7	0.8633
AT5G60860		AtRABA1f	RAB GTPase homolog A1F (.1)		Lus10039895 [exp]	12.3	0.8707

Compare expression of checked genes

Lus10034825 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.