Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G51540 643 / 0 Galactose oxidase/kelch repeat superfamily protein (.1) AT3G27220 557 / 0 Galactose oxidase/kelch repeat superfamily protein (.1) AT2G02870 45 / 0.0001 Galactose oxidase/kelch repeat superfamily protein (.1.2.3) AT1G14330 44 / 0.0003 Galactose oxidase/kelch repeat superfamily protein (.1) AT1G27420 42 / 0.0004 Galactose oxidase/kelch repeat superfamily protein (.1) AT2G44030 42 / 0.0006 Galactose oxidase/kelch repeat superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10033376 [exp] 872 / 0 AT1G51540 644 / 0.0 Galactose oxidase/kelch repeat superfamily protein (.1) Lus10014602 [exp] 531 / 0 AT3G27220 555 / 0.0 Galactose oxidase/kelch repeat superfamily protein (.1) Lus10032070 [exp] 519 / 0 AT3G27220 536 / 0.0 Galactose oxidase/kelch repeat superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G006200 [exp] 684 / 0 AT1G51540 662 / 0.0 Galactose oxidase/kelch repeat superfamily protein (.1) Potri.010G252100 [exp] 671 / 0 AT1G51540 637 / 0.0 Galactose oxidase/kelch repeat superfamily protein (.1) Potri.001G334800 [exp] 307 / 2e-102 AT3G27220 0 / 1 Galactose oxidase/kelch repeat superfamily protein (.1) Potri.005G013000 [exp] 56 / 3e-08 AT1G18610 172 / 2e-46 Galactose oxidase/kelch repeat superfamily protein (.1) Potri.001G178300 [exp] 48 / 9e-06 AT1G80440 362 / 2e-124 Galactose oxidase/kelch repeat superfamily protein (.1) Potri.013G008200 [exp] 47 / 2e-05 AT1G74150 200 / 3e-56 Galactose oxidase/kelch repeat superfamily protein (.1) Potri.012G062100 [exp] 47 / 3e-05 AT1G18610 631 / 0.0 Galactose oxidase/kelch repeat superfamily protein (.1) Potri.011G046100 [exp] 44 / 0.0001 AT1G16250 89 / 3e-19 Galactose oxidase/kelch repeat superfamily protein (.1) Potri.015G059400 [exp] 44 / 0.0003 AT1G18610 622 / 0.0 Galactose oxidase/kelch repeat superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0186 [flax] [poplar] Beta_propeller PF01344 [flax] [poplar] Kelch_1 Kelch motif
Representative CDS sequence Show only first row Show all	>Lus10034826 pacid=23142280 polypeptide=Lus10034826 locus=Lus10034826.g ID=Lus10034826.BGIv1.0 annot-version=v1.0 ATGGCACGGCTGCCAGGATCAAAGCAAAAACCGACGACGAGATTGGCCCTGGTCTGTGTTTCCTTGCTAGGTTTCGCTCTTATCGCCGATTATCTCTGGG CTTCGTCCCCGCATTTCGGAGCTTCAACTTTCTCCGACGTCCGTTTCCCCATTACCGATCTCATAATTCCCGGAACCGGCGGCGACGCTTCCGCAAAATC AGCAGATGCTGAGAAGCAAAAGAGCAATGCGAAGGGGAAAAACAAGTACGCTAATGTGCCTGAAAGATACCTCTCAGCGACATTCGCTGATTTGCCTGGC CCTACGCTAGATTGGAAGAAGATGGCTAATTCCCCAGTGCCGCGTCTTGATGGAGCTGCTATCCAGATTAAGAATCTTCTCTTTGTCTTTGCTGGTTATG GAACCATTGATTATGTACATTCACACGTCGATATTTATAATTTCACCGATAATACTTGGGGAGGGAGATTTGATATGCCCAAAGAGATGGCACATTCACA CTTGGGAATGGTGGCAGATGGGAGATACATCTATATTGTGAATGGACAATATGGACCACAGTGCCGAGGAGCAACTGCCTATACATTTGTGCTTGATACT GAAACAAAGCAGTGGAGCCAGATGCCACCGTTGCCAGTTCCAAGATATGCACCAGCAACACAGCTTTGGAGGGGTAGACTTCATGTGATGGGCGGAAGCA AGGAAAATAGGCACACACCAGCAATAGAGCATTGGAGTCTGGCGGTTAAGGATGGAAAAGCCTTGGAAAAGGAATGGAGGGCAGAAATTCCCATACCTCG TGGAGGACCTCACAGGGCTTGTGTTGTTGCGAATGATCGACTTTATGTTATTGGTGGTCAAGAGGGTGATTTTATGGCTAAACCTGGATCTCCGATATTC AAGTGTTCGCGCAGAAATGAGGTGGTATACGGTGATGTGTACATGCTGGATGATGAGATGAAGTGGAAAGTGTTGCCTTCAATGCCAAAGCCTGACTCCC ACATTGAATTTGCTTGGGCACTTGTAAATAATTCCGTTGTAATCATTGGAGGGACAACAGATAAGCATCCTGTAACCAAGAGGATGGTCCTCGTCGGCGA AATCTTCCAGTTTAACCTAAACACACTGAAATGGTCAGTGATCGGGAAACTTCCTTACCGGGTGAAAACGACACTGGTCGGATTCTGGGATGGAAATGTG TACTTCACTTCCGGGCAGCGAGACAAAGGACCAGATGATCCATCACCCAGGAAAGTCATTGGGGATTTGTGGAGAACCAAATTGAAATTGGAACTCTGA
AA sequence Show only first row Show all	>Lus10034826 pacid=23142280 polypeptide=Lus10034826 locus=Lus10034826.g ID=Lus10034826.BGIv1.0 annot-version=v1.0 MARLPGSKQKPTTRLALVCVSLLGFALIADYLWASSPHFGASTFSDVRFPITDLIIPGTGGDASAKSADAEKQKSNAKGKNKYANVPERYLSATFADLPG PTLDWKKMANSPVPRLDGAAIQIKNLLFVFAGYGTIDYVHSHVDIYNFTDNTWGGRFDMPKEMAHSHLGMVADGRYIYIVNGQYGPQCRGATAYTFVLDT ETKQWSQMPPLPVPRYAPATQLWRGRLHVMGGSKENRHTPAIEHWSLAVKDGKALEKEWRAEIPIPRGGPHRACVVANDRLYVIGGQEGDFMAKPGSPIF KCSRRNEVVYGDVYMLDDEMKWKVLPSMPKPDSHIEFAWALVNNSVVIIGGTTDKHPVTKRMVLVGEIFQFNLNTLKWSVIGKLPYRVKTTLVGFWDGNV YFTSGQRDKGPDDPSPRKVIGDLWRTKLKLEL

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G51540			Galactose oxidase/kelch repeat...		Lus10034826 [exp]	0	1
AT4G01400			unknown protein		Lus10030195 [exp]	1.4	0.9488
AT2G32450			Calcium-binding tetratricopept...		Lus10010627 [exp]	1.7	0.9015
AT4G01400			unknown protein		Lus10002677 [exp]	2.8	0.9209
AT4G18030			S-adenosyl-L-methionine-depend...		Lus10011045 [exp]	4.5	0.8931
AT3G10290			Nucleotide-sugar transporter f...		Lus10042039 [exp]	4.9	0.8902
AT4G38500			Protein of unknown function (D...		Lus10024001 [exp]	5.3	0.8798
AT4G31490			Coatomer, beta subunit (.1)		Lus10027160 [exp]	6.2	0.8524
AT4G26455		WIP1	WPP domain interacting protein...		Lus10008336 [exp]	7.3	0.8781
AT3G19870			unknown protein		Lus10030556 [exp]	8.1	0.8919
AT1G69430			unknown protein		Lus10037135 [exp]	8.2	0.8782

Compare expression of checked genes

Lus10034826 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.