Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G51550 503 / 1e-176 Kelch repeat-containing F-box family protein (.1) AT1G68050 126 / 3e-31 ADO3, FKF1 "flavin-binding, kelch repeat, f box 1", flavin-binding, kelch repeat, f box 1 (.1) AT2G18915 125 / 9e-31 ADO2, LKP2 ADAGIO 2, LOV KELCH protein 2 (.1.2) AT5G57360 119 / 1e-28 LKP1, FKL2, ADO1, ZTL ZEITLUPE, LOV KELCH PROTEIN 1, FKF1-LIKE PROTEIN 2, ADAGIO 1, Galactose oxidase/kelch repeat superfamily protein (.1.2) AT1G74150 71 / 6e-13 Galactose oxidase/kelch repeat superfamily protein (.1) AT2G36360 70 / 1e-12 Galactose oxidase/kelch repeat superfamily protein (.1.2.3.4.5) AT1G03445 65 / 5e-11 BSU1 BRI1 SUPPRESSOR 1, Serine/threonine protein phosphatase family protein (.1) AT2G27210 65 / 7e-11 BSL3 BRI1 suppressor 1 (BSU1)-like 3 (.1), BRI1 suppressor 1 (BSU1)-like 3 (.2) AT5G27630 63 / 2e-10 ACBP5 acyl-CoA binding protein 5 (.1) AT5G18590 62 / 4e-10 Galactose oxidase/kelch repeat superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10033377 [exp] 851 / 0 AT1G51550 496 / 5e-174 Kelch repeat-containing F-box family protein (.1) Lus10019169 [exp] 123 / 6e-30 AT1G68050 969 / 0.0 "flavin-binding, kelch repeat, f box 1", flavin-binding, kelch repeat, f box 1 (.1) Lus10029002 [exp] 121 / 3e-29 AT1G68050 935 / 0.0 "flavin-binding, kelch repeat, f box 1", flavin-binding, kelch repeat, f box 1 (.1) Lus10015531 [exp] 119 / 1e-28 AT5G57360 1051 / 0.0 ZEITLUPE, LOV KELCH PROTEIN 1, FKF1-LIKE PROTEIN 2, ADAGIO 1, Galactose oxidase/kelch repeat superfamily protein (.1.2) Lus10020003 [exp] 118 / 1e-28 AT5G57360 790 / 0.0 ZEITLUPE, LOV KELCH PROTEIN 1, FKF1-LIKE PROTEIN 2, ADAGIO 1, Galactose oxidase/kelch repeat superfamily protein (.1.2) Lus10030757 [exp] 88 / 3e-18 AT1G68050 935 / 0.0 "flavin-binding, kelch repeat, f box 1", flavin-binding, kelch repeat, f box 1 (.1) Lus10025470 [exp] 86 / 9e-18 AT5G57360 1031 / 0.0 ZEITLUPE, LOV KELCH PROTEIN 1, FKF1-LIKE PROTEIN 2, ADAGIO 1, Galactose oxidase/kelch repeat superfamily protein (.1.2) Lus10006959 [exp] 86 / 9e-18 AT5G57360 1024 / 0.0 ZEITLUPE, LOV KELCH PROTEIN 1, FKF1-LIKE PROTEIN 2, ADAGIO 1, Galactose oxidase/kelch repeat superfamily protein (.1.2) Lus10013237 [exp] 86 / 1e-17 AT1G68050 940 / 0.0 "flavin-binding, kelch repeat, f box 1", flavin-binding, kelch repeat, f box 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G252200 [exp] 596 / 0 AT1G51550 500 / 3e-175 Kelch repeat-containing F-box family protein (.1) Potri.008G006300 [exp] 578 / 0 AT1G51550 496 / 1e-173 Kelch repeat-containing F-box family protein (.1) Potri.018G090800 [exp] 122 / 1e-29 AT5G57360 1042 / 0.0 ZEITLUPE, LOV KELCH PROTEIN 1, FKF1-LIKE PROTEIN 2, ADAGIO 1, Galactose oxidase/kelch repeat superfamily protein (.1.2) Potri.006G166300 [exp] 120 / 3e-29 AT5G57360 972 / 0.0 ZEITLUPE, LOV KELCH PROTEIN 1, FKF1-LIKE PROTEIN 2, ADAGIO 1, Galactose oxidase/kelch repeat superfamily protein (.1.2) Potri.008G135200 [exp] 115 / 1e-27 AT1G68050 968 / 0.0 "flavin-binding, kelch repeat, f box 1", flavin-binding, kelch repeat, f box 1 (.1) Potri.010G105700 [exp] 114 / 7e-27 AT1G68050 977 / 0.0 "flavin-binding, kelch repeat, f box 1", flavin-binding, kelch repeat, f box 1 (.1) Potri.013G008200 [exp] 77 / 9e-15 AT1G74150 200 / 3e-56 Galactose oxidase/kelch repeat superfamily protein (.1) Potri.005G013000 [exp] 76 / 2e-14 AT1G18610 172 / 2e-46 Galactose oxidase/kelch repeat superfamily protein (.1) Potri.012G062100 [exp] 71 / 5e-13 AT1G18610 631 / 0.0 Galactose oxidase/kelch repeat superfamily protein (.1) Potri.008G024700 [exp] 67 / 7e-12 AT2G36360 639 / 0.0 Galactose oxidase/kelch repeat superfamily protein (.1.2.3.4.5)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0271 [flax] [poplar] F-box PF00646 [flax] [poplar] F-box F-box domain
Representative CDS sequence Show only first row Show all	>Lus10034827 pacid=23142174 polypeptide=Lus10034827 locus=Lus10034827.g ID=Lus10034827.BGIv1.0 annot-version=v1.0 ATGGCTTCTTCCTTCTTCTTCTACAACGATAATGGATCATCATCATCTTCTTCATCTTCATCTCCGTCGCCCATCTTTAACATGGCTCCAGATCATCTCT TCACCATCTTGCTCCTGCTTCCCGTTGACTCGATCCTCTCATTCTCCACCACCTGCAAGAAATTCAGATCCCTCGCTACCTCGGACACCCTCTGGCACTC TGTTTGCAGCAGGGAATTCGGGACTTCCTCAGTCGATTCACTCAGATCTTCCCTTCTTCCCAATTCCAGATGGATTTCGCTCTACAGACAGCTGTATCGC CTTGATTCTGTGTCTTGCATCAGACTTATGCCAGACCCAGATGCTCAATTGGGGATCCCTTGCCCCAGGGCTTCCCACTCCCTCAACTTTATATCTGATT GCTTAGTCCTCTTTGGCGGCGGCTGCGAAGGAGGTCGCCATCTTGACGAGACATGGATAACATACGTCAGCAGCAATCCTCGGGCAGCGTTGAAATGGCA GAAAGTATGTACGGGGATCCCAAGTGGGAGGTTTGGGCATACGAGTGTTACTATTGGAAACTATGTCATTCTTTTCGGAGGGATCAATGACCGTGGAGAC CGTCACAATGACACATGGGTTGGACGAGTTGTACCCACAGACAACATTGGTGGTGGCATCACATTGTCATGGAGGCTGCTTGATGTCATCAGAACCAGGG CCCCGCCACCAAGGGGTGCACATGCTGCTTGCTGCTTCGAGAGGAAAATGGTTATCCAGGGAGGGATCGGACTCGCTGGCCTTAGGTTAGGGGACACATG GGTTTTGGAGCTATCAGAAGACTTCTGCTCCGGAACATGGCGAGAATTATCGACTCATCCGGCACCTCCACCGCGATCAGGACACACATTGACATGCATC GGAGGAACCAAGATGGTCCTCTTCGGAGGTAGGGGAATTGGTTATGAGGTCATGGATGATGTGTGGCTTCTGCAAGTGTGTGAAGGTGATCTTCGGTGGG TGCAGATCGTGTATGAAGTGTCGAAAGTACCTCAAGGAGTCTCGCTGCGTCGAGTTGGTCATTCAGCTACTATGATCCTGGGAGGCCGGCTGCTCATCTA TGGAGGAGAAGATTCTCTCAGGCACAGAAAAGATGACTTGTTGATTCTAGACATTGAGGCAGTCGCATCTTCGTTGTGGAAGAAGATCAAGGAAAAGGGC GATAAACCGAACCGCAGATCGTTCCACAGGGCGTGTGCAGATCAATCAGGGAGGTATCTGTATCTTTTCGGTGGAATGGTGGATGGATTGCTTCAGCCAC GTGAAGCAGCTGGGTTGAGGTTCGATGGAGAGCTCTTTGTTGTTGAGCTTTTCCAGTAG
AA sequence Show only first row Show all	>Lus10034827 pacid=23142174 polypeptide=Lus10034827 locus=Lus10034827.g ID=Lus10034827.BGIv1.0 annot-version=v1.0 MASSFFFYNDNGSSSSSSSSSPSPIFNMAPDHLFTILLLLPVDSILSFSTTCKKFRSLATSDTLWHSVCSREFGTSSVDSLRSSLLPNSRWISLYRQLYR LDSVSCIRLMPDPDAQLGIPCPRASHSLNFISDCLVLFGGGCEGGRHLDETWITYVSSNPRAALKWQKVCTGIPSGRFGHTSVTIGNYVILFGGINDRGD RHNDTWVGRVVPTDNIGGGITLSWRLLDVIRTRAPPPRGAHAACCFERKMVIQGGIGLAGLRLGDTWVLELSEDFCSGTWRELSTHPAPPPRSGHTLTCI GGTKMVLFGGRGIGYEVMDDVWLLQVCEGDLRWVQIVYEVSKVPQGVSLRRVGHSATMILGGRLLIYGGEDSLRHRKDDLLILDIEAVASSLWKKIKEKG DKPNRRSFHRACADQSGRYLYLFGGMVDGLLQPREAAGLRFDGELFVVELFQ

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G51550			Kelch repeat-containing F-box ...		Lus10034827 [exp]	0	1
AT3G62240	C2H2ZnF		RING/U-box superfamily protein...		Lus10010069 [exp]	4.8	0.8672
AT1G57790			F-box family protein (.1)		Lus10022706 [exp]	6.7	0.8775
AT1G68300			Adenine nucleotide alpha hydro...		Lus10034337 [exp]	10.0	0.9007
AT4G12570		UPL5	ubiquitin protein ligase 5 (.1...		Lus10010493 [exp]	10.8	0.8899
AT4G01000			Ubiquitin-like superfamily pro...		Lus10012629 [exp]	13.4	0.8646
AT5G48160		OBE2	OBERON2, Protein of unknown fu...		Lus10012327 [exp]	16.0	0.8712
AT5G44250			Protein of unknown function DU...		Lus10042660 [exp]	17.2	0.9023
AT1G44790			ChaC-like family protein (.1)		Lus10003737 [exp]	23.4	0.8848
AT1G69060			Chaperone DnaJ-domain superfam...		Lus10019189 [exp]	24.6	0.8865
AT5G56520			unknown protein		Lus10020285 [exp]	27.7	0.8531

Compare expression of checked genes

Lus10034827 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.