Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G51560 492 / 2e-174 Pyridoxamine 5'-phosphate oxidase family protein (.1) AT3G21140 483 / 5e-171 Pyridoxamine 5'-phosphate oxidase family protein (.1) AT3G03890 96 / 6e-22 FMN binding (.1.2) AT2G04690 41 / 0.0006 Pyridoxamine 5'-phosphate oxidase family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10033378 [exp] 695 / 0 AT1G51560 483 / 9e-171 Pyridoxamine 5'-phosphate oxidase family protein (.1) Lus10010649 [exp] 75 / 9e-15 AT3G03890 409 / 9e-144 FMN binding (.1.2) Lus10013617 [exp] 74 / 5e-14 AT3G03890 363 / 6e-122 FMN binding (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G006400 [exp] 541 / 0 AT1G51560 533 / 0.0 Pyridoxamine 5'-phosphate oxidase family protein (.1) Potri.010G252300 [exp] 533 / 0 AT1G51560 561 / 0.0 Pyridoxamine 5'-phosphate oxidase family protein (.1) Potri.019G035200 [exp] 89 / 1e-19 AT3G03890 452 / 4e-161 FMN binding (.1.2) Potri.013G057700 [exp] 88 / 2e-19 AT3G03890 429 / 6e-153 FMN binding (.1.2) Potri.001G470300 [exp] 43 / 0.0001 AT2G04690 276 / 3e-95 Pyridoxamine 5'-phosphate oxidase family protein (.1.2) Potri.004G072400 [exp] 44 / 0.0002 AT5G24060 377 / 1e-126 Pentatricopeptide repeat (PPR) superfamily protein (.1), Pentatricopeptide repeat (PPR) superfamily protein (.2) Potri.017G148600 [exp] 44 / 0.0002 AT3G49140 256 / 1e-79 Pentatricopeptide repeat (PPR) superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0336 [flax] [poplar] FMN-binding PF01243 [flax] [poplar] Putative_PNPOx Pyridoxamine 5'-phosphate oxidase
Representative CDS sequence Show only first row Show all	>Lus10034828 pacid=23142184 polypeptide=Lus10034828 locus=Lus10034828.g ID=Lus10034828.BGIv1.0 annot-version=v1.0 ATGGAATCTCTTGCAAGCTCGGCCTTCATTTCCAAATTCCCTGAATCATGCCCGCTCCTCACTCCCTCCTCTTCTTCTCCCTGCTGTTCCTCATCTTCCA CCAAGATTCTCTCCGCTAAGGCCGGAATATGGTCTCCCAAATTCGTCGAAACCGCGCGCTTCCCTCGACTCCGCCTTACTGCTGTAGGCGGCGCTGGGGA CGATAAGACTCGCCGCTTGAATGATGAAGTTGCCTTAAGTTCTGACGCAACCCTTTCTCTGTCTCAGGAACTCATAAAGAAAACTGAAGGAAATGAAAAG GATTCCGAGAAAATTTTGAAGGTAGAGCAGCTACCTTTGATGACAGCTTCCCCTGGAAGTGGAACCAGTGGGGGAACTAGAGCTGGCCTGTTCAGAACCC CGATTTCTGGTGGCGTACAGAGTGCAACCTCAGCACATGGCTTACCTCGACCAGCCCTGGCAGTTCGGAACCTCATGGAACAGGCTAGATTCGCCCATCT GTGCACTGTAATGTCTCGGATGCATCATCGGCGAGAAGGGTATCCATTTGGTTCTTTGGTAGATTTTGCACCAGATGCAATGGGCCATCCAATATTTTCG TTTTCACCCTTGGCCATACACACACGGAACTTATTAGCAGATCCCAAATGCACCCTAGTTGTTCAGATACCTGGATGGAGCAGCTTATCAAATGCAAGAG TTACAATCTTTGGAGATGTTTACCCGCTAGCAGAAGATGAGCAGGAATGGGCTCACAAACAGTATATTGCTAAACATCAGCAAGGTCCTTCCCAGCAGTG GGGGAATTTCTACTACTTTAGGATGCGAAATATAAGTGACATATACTTCATTGGAGGTTTCGGCACTGTTGCATGGGTGGACGTTAAAGAATATGAGGCC CTTCTTCCTGATAAGATTGCGGTTGATGGAGGAGAGAACAATTTGAAGGAACTGAATGTGATGTTCTCAAAGCGGTTGAAAGAGCTGTTAGCAAGTGAAA TGGAGGTAGATGATGCTGCAATCATATCGATAGACAGCAAAGGAATAGACATAAGGGTTCGTCAGGGTGCACAGTTCAACGTTCAGAGGCTATCTTTTGA AGAAGGGGTAGTGGTAGAGAATTTGGAGGAAGCTAAGCTTGCTGTGCGGAAAGTATTGAACAAAGGCAAAGTTGGTAACCTGCAGAAATAA
AA sequence Show only first row Show all	>Lus10034828 pacid=23142184 polypeptide=Lus10034828 locus=Lus10034828.g ID=Lus10034828.BGIv1.0 annot-version=v1.0 MESLASSAFISKFPESCPLLTPSSSSPCCSSSSTKILSAKAGIWSPKFVETARFPRLRLTAVGGAGDDKTRRLNDEVALSSDATLSLSQELIKKTEGNEK DSEKILKVEQLPLMTASPGSGTSGGTRAGLFRTPISGGVQSATSAHGLPRPALAVRNLMEQARFAHLCTVMSRMHHRREGYPFGSLVDFAPDAMGHPIFS FSPLAIHTRNLLADPKCTLVVQIPGWSSLSNARVTIFGDVYPLAEDEQEWAHKQYIAKHQQGPSQQWGNFYYFRMRNISDIYFIGGFGTVAWVDVKEYEA LLPDKIAVDGGENNLKELNVMFSKRLKELLASEMEVDDAAIISIDSKGIDIRVRQGAQFNVQRLSFEEGVVVENLEEAKLAVRKVLNKGKVGNLQK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G51560			Pyridoxamine 5'-phosphate oxid...		Lus10034828 [exp]	0	1
AT1G51560			Pyridoxamine 5'-phosphate oxid...		Lus10033378 [exp]	1.0	0.8975
AT4G33520		AtHMAC6, HMA6, ...	Arabidopsis thaliana heavy met...		Lus10023777 [exp]	2.4	0.8606
AT5G12080		ATMSL10, MSL10	mechanosensitive channel of sm...		Lus10019694 [exp]	2.8	0.8689
AT1G70210		ATCYCD1;1, CYCD...	CYCLIN D1;1 (.1)		Lus10010709 [exp]	4.0	0.8520
AT4G14700		ORC1, ATORC1A, ...	origin recognition complex 1 (...		Lus10031848 [exp]	4.2	0.8301
AT1G70210		ATCYCD1;1, CYCD...	CYCLIN D1;1 (.1)		Lus10029194 [exp]	5.5	0.8518
AT5G52820			WD-40 repeat family protein / ...		Lus10039597 [exp]	11.0	0.8449
AT2G29260			NAD(P)-binding Rossmann-fold s...		Lus10040730 [exp]	11.7	0.8007
AT3G43210		TES, ATNACK2	TETRASPORE, ARABIDOPSIS NPK1-A...		Lus10005181 [exp]	12.5	0.8099
AT1G26370		RID1	RNA helicase family protein (....		Lus10036917 [exp]	13.2	0.8410

Compare expression of checked genes

Lus10034828 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.