Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G71070 240 / 1e-75 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) AT3G15350 231 / 1e-71 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1.2) AT1G03520 228 / 4e-70 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1.2) AT5G15050 224 / 1e-68 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) AT4G27480 221 / 8e-68 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1.2) AT3G24040 219 / 3e-67 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) AT2G37585 217 / 1e-66 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) AT4G03340 216 / 9e-66 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) AT5G39990 215 / 3e-65 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) AT1G53100 209 / 2e-63 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10033379 [exp] 701 / 0 AT1G71070 278 / 2e-90 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) Lus10010887 [exp] 236 / 3e-73 AT1G71070 572 / 0.0 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) Lus10012710 [exp] 231 / 1e-71 AT1G71070 561 / 0.0 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) Lus10032189 [exp] 228 / 3e-70 AT5G15050 648 / 0.0 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) Lus10014495 [exp] 228 / 3e-70 AT5G15050 649 / 0.0 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) Lus10011765 [exp] 226 / 2e-69 AT3G24040 491 / 4e-173 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) Lus10023687 [exp] 223 / 2e-68 AT3G24040 491 / 2e-173 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) Lus10043324 [exp] 221 / 1e-67 AT3G15350 641 / 0.0 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1.2) Lus10019477 [exp] 220 / 2e-67 AT3G15350 639 / 0.0 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G006500 [exp] 367 / 7e-125 AT1G71070 321 / 8e-107 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) Potri.010G114800 [exp] 250 / 2e-79 AT1G71070 581 / 0.0 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) Potri.008G128000 [exp] 248 / 1e-78 AT1G71070 574 / 0.0 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) Potri.001G053800 [exp] 236 / 2e-73 AT3G24040 505 / 6e-179 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) Potri.013G145500 [exp] 228 / 3e-70 AT1G03520 667 / 0.0 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1.2) Potri.017G075600 [exp] 227 / 5e-70 AT5G15050 671 / 0.0 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) Potri.011G119600 [exp] 226 / 9e-70 AT3G15350 614 / 0.0 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1.2) Potri.001G399500 [exp] 226 / 1e-69 AT3G15350 622 / 0.0 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1.2) Potri.006G263000 [exp] 226 / 2e-69 AT2G37585 500 / 7e-177 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) Potri.019G104600 [exp] 221 / 2e-67 AT4G03340 639 / 0.0 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0110 [flax] [poplar] GT-A PF02485 [flax] [poplar] Branch Core-2/I-Branching enzyme
Representative CDS sequence Show only first row Show all	>Lus10034829 pacid=23142299 polypeptide=Lus10034829 locus=Lus10034829.g ID=Lus10034829.BGIv1.0 annot-version=v1.0 ATGAAGCTACCTGGGTTCTCTTCAGGATTGCTTCTTGCTGTCACAATGGTTGTAATACTACTCACTTCGCGATCGATACGAATCGTATGGCTTCCCACCA GGTTATCAACAACCAGTACTGACCACATTACTGTCCACGCTGGCACTAACAACATCATCACTCCTTCCAAAGGTCCTGGCTTCCCTCCAGTACTAGCCTA CTGGATATTCGGTACAAGTGGAGATGGCGAGCGGATGTTGAGGCTGGTGAAAGCAATCTACCATCCCAGAAACCAGTACCTGCTGGAACTGGATGCAGAG TCCTCCTATGAACAGGAGCGTGTAGATTTGGCTTTACGGTTTGAATCGGAGAGGGTATTCTCAGAATTTGGGAATGTTAATGTTGTTGGGAAGGGATGGG GCGTTAACCAGATGGGTGCATCTGGGTTGGCTGCAATGCTACATGCTGCTGCTTTGCTTCTGAGGTTGAACCAACACTGGGATTGGTTCATCAATTTAAG CCCTGATGAGTACCCGCTCATTACTCCAGATGATTTGCTGCATGCTATCAGTTCATTGCCTAGAGATGTCAACTTCATCCATTATACCAATTCTACTGAC TGGAGGGAGAAGAAGATGCAAATAGTGGTGGACCCAAGCTTACATCTCAACAACAAGGGTAGCTACCTTTACTACGCTGTGGAGAAGCGCCACACTCCTG ACTCTTTTCACATATTTGGAGGGTCACCTAGGGTGATTTTAACGAGGGAGTTACTAGACTACTGCGTGCAAGGATGGGACAACCTCCCAAGGAGACTGCT AATGTACTTGGCTAACACAGCCTACCCATTAGAGACATACTTCCACACTATCCTCTGCAACTCCCCTGACTTTGAGAACACCACCATTCTCAACTCCGAC CTGAGGTACAACATCGATCACAAGAATACTGATCAAGAAAGGCAGTTGGCAGATATGCTAGGCAGTGGGGCTGTGTTTGCAAGGGCATTTAATAGAGACG ATGATCACTTGATTCTGGACAAGATTGATGAGGCTGCCCTGAAGCGCCCCAGGGATGCAGTAGTGCAAGGGCAATGGTGTGGGTTACAAGATGATGACGA CGATGATGATGCTAGCAAGGTTCATAATATTGATGCTGTGAAGGCAGGGTTGAATGGGGTAGAGCTTGGGATTTTGTTGGCTAAACTTGTTTCCCAAGGA ACAAATACTAGTTACTGCCATCAAATGCTTTCAAATCAATGA
AA sequence Show only first row Show all	>Lus10034829 pacid=23142299 polypeptide=Lus10034829 locus=Lus10034829.g ID=Lus10034829.BGIv1.0 annot-version=v1.0 MKLPGFSSGLLLAVTMVVILLTSRSIRIVWLPTRLSTTSTDHITVHAGTNNIITPSKGPGFPPVLAYWIFGTSGDGERMLRLVKAIYHPRNQYLLELDAE SSYEQERVDLALRFESERVFSEFGNVNVVGKGWGVNQMGASGLAAMLHAAALLLRLNQHWDWFINLSPDEYPLITPDDLLHAISSLPRDVNFIHYTNSTD WREKKMQIVVDPSLHLNNKGSYLYYAVEKRHTPDSFHIFGGSPRVILTRELLDYCVQGWDNLPRRLLMYLANTAYPLETYFHTILCNSPDFENTTILNSD LRYNIDHKNTDQERQLADMLGSGAVFARAFNRDDDHLILDKIDEAALKRPRDAVVQGQWCGLQDDDDDDDASKVHNIDAVKAGLNGVELGILLAKLVSQG TNTSYCHQMLSNQ

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G71070			Core-2/I-branching beta-1,6-N-...		Lus10034829 [exp]	0	1
AT4G15530		PPDK	pyruvate orthophosphate dikina...		Lus10012770 [exp]	1.4	0.9281
AT5G01360		TBL3	TRICHOME BIREFRINGENCE-LIKE 3,...		Lus10005042 [exp]	2.4	0.9257
AT1G05170			Galactosyltransferase family p...		Lus10021538 [exp]	2.6	0.8979
AT1G79820		SGB1	SUPPRESSOR OF G PROTEIN BETA1,...		Lus10035862 [exp]	3.0	0.9183
AT1G17950	MYB	AtMYB52, BW52, ...	myb domain protein 52 (.1)		Lus10028638 [exp]	3.5	0.9176
AT4G15530		PPDK	pyruvate orthophosphate dikina...		Lus10034005 [exp]	4.2	0.9084
AT2G17840		ERD7	EARLY-RESPONSIVE TO DEHYDRATIO...		Lus10027840 [exp]	5.0	0.8709
AT2G33990		IQD9	IQ-domain 9 (.1)		Lus10015300 [exp]	5.0	0.9139
AT1G28110		SCPL45	serine carboxypeptidase-like 4...		Lus10021856 [exp]	6.9	0.8713
AT2G35100		ARAD1	ARABINAN DEFICIENT 1, Exostosi...		Lus10036219 [exp]	8.0	0.8819

Compare expression of checked genes

Lus10034829 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.