Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G21150 99 / 5e-25 CO EIP6, BBX32 EMF1-Interacting Protein 1, B-box domain protein 32, B-box 32 (.1) AT4G15248 66 / 1e-13 CO B-box type zinc finger family protein (.1) AT4G27310 62 / 2e-11 CO B-box type zinc finger family protein (.1) AT5G54470 61 / 3e-11 CO B-box type zinc finger family protein (.1) AT3G21890 56 / 5e-10 CO B-box type zinc finger family protein (.1) AT5G15840 54 / 3e-08 CO FG, CO CONSTANS, B-box type zinc finger protein with CCT domain (.1.2) AT3G02380 50 / 3e-07 CO ATCOL2, COL2 CONSTANS-like 2 (.1) AT5G24930 49 / 8e-07 CO COL4, ATCOL4 CONSTANS-like 4 (.1) AT2G33500 48 / 2e-06 CO COL14 B-box type zinc finger protein with CCT domain (.1.2) AT5G15850 48 / 2e-06 CO COL1, ATCOL1 CONSTANS-like 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10033380 [exp] 350 / 1e-123 AT3G21150 112 / 3e-30 EMF1-Interacting Protein 1, B-box domain protein 32, B-box 32 (.1) Lus10039694 [exp] 65 / 3e-13 AT4G15248 108 / 1e-31 B-box type zinc finger family protein (.1) Lus10027151 [exp] 64 / 8e-13 AT4G15248 109 / 7e-32 B-box type zinc finger family protein (.1) Lus10031583 [exp] 61 / 7e-12 AT3G21890 96 / 1e-26 B-box type zinc finger family protein (.1) Lus10031593 [exp] 62 / 1e-11 AT4G27310 119 / 2e-33 B-box type zinc finger family protein (.1) Lus10033751 [exp] 62 / 1e-11 AT4G27310 114 / 9e-32 B-box type zinc finger family protein (.1) Lus10015097 [exp] 60 / 2e-11 AT4G15248 94 / 5e-26 B-box type zinc finger family protein (.1) Lus10039727 [exp] 56 / 3e-09 AT5G54470 118 / 1e-32 B-box type zinc finger family protein (.1) Lus10018513 [exp] 56 / 5e-09 AT4G27310 117 / 3e-32 B-box type zinc finger family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G007000 [exp] 147 / 1e-43 AT3G21150 128 / 3e-36 EMF1-Interacting Protein 1, B-box domain protein 32, B-box 32 (.1) Potri.010G251800 [exp] 100 / 1e-25 AT3G21150 130 / 5e-37 EMF1-Interacting Protein 1, B-box domain protein 32, B-box 32 (.1) Potri.007G121100 [exp] 64 / 5e-13 AT4G15248 108 / 2e-31 B-box type zinc finger family protein (.1) Potri.013G150500 [exp] 66 / 6e-13 AT4G27310 114 / 1e-31 B-box type zinc finger family protein (.1) Potri.004G026900 [exp] 62 / 8e-12 AT4G27310 109 / 2e-30 B-box type zinc finger family protein (.1) Potri.011G125400 [exp] 64 / 9e-12 AT5G54470 120 / 1e-32 B-box type zinc finger family protein (.1) Potri.001G414700 [exp] 63 / 1e-11 AT5G54470 126 / 2e-35 B-box type zinc finger family protein (.1) Potri.017G039400 [exp] 59 / 5e-11 AT4G15248 100 / 3e-28 B-box type zinc finger family protein (.1) Potri.011G039700 [exp] 57 / 7e-10 AT4G27310 105 / 3e-28 B-box type zinc finger family protein (.1) Potri.004G027100 [exp] 53 / 5e-09 AT5G54470 97 / 4e-26 B-box type zinc finger family protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10034830 pacid=23142313 polypeptide=Lus10034830 locus=Lus10034830.g ID=Lus10034830.BGIv1.0 annot-version=v1.0 ATGGATGATGATCATCGGGTAATCAGCGGTTGCGAGCTCTGCTCTAGATCGCCGGATCTCTACTGCAGCTCCGACGATGCTTTCCTCTGCTTCCACTGCG ATTCCAGAGTCCACGCCACTAACTTCCTCGTCGCTCGTCATCTCCGCCTTTCCATCTGCACACACTGCCGCTCTCTTACGGGAAACTCCTTCTCCGGTCC TGGATCTCATCCTCAATCACCTGCCGCCTGCACCTCCTGCACTTCCCAAACCGACTCCATTTCCTGCTCTTCTTCCTCCGCTATCTCCTCTACCTGCATT TCCACTTCTCCTCAATCGCTCTGCTCCGGTAATTCGCCGGTGGATTTGCGGAGATCCGGTATCAACGAAGGCAAGGTCCGGGTTGTTTTCTCGAATTGGT GTAGGAAGCTGGGGGTGAAGGGTAACCTGGTGGAGGCGAAAGCGGTTCAGGCGATGGAGATGTGTTGGGGAAGACTGGGGAGAGTGTTGCCTTTTCGGTT GAGCTTAGCGGCGTCGTTTTGGCTTGGAGCGAGGCTGAGTGGTGACAGCTCGCCTCGGAATCTGTTGAAATTGGCGCAGGTTTCGGGGGTTCCAGCGGAG CTAATCGTTCGTATGGAGGCGAAACTTGAAGGGCAGTTGAGGAGCAGTGGGAGATCGCGGCGGCGTGAATCGGAGATGGTGGAGGGGTGGGGAGAGTCGT GTGTTTGA
AA sequence Show only first row Show all	>Lus10034830 pacid=23142313 polypeptide=Lus10034830 locus=Lus10034830.g ID=Lus10034830.BGIv1.0 annot-version=v1.0 MDDDHRVISGCELCSRSPDLYCSSDDAFLCFHCDSRVHATNFLVARHLRLSICTHCRSLTGNSFSGPGSHPQSPAACTSCTSQTDSISCSSSSAISSTCI STSPQSLCSGNSPVDLRRSGINEGKVRVVFSNWCRKLGVKGNLVEAKAVQAMEMCWGRLGRVLPFRLSLAASFWLGARLSGDSSPRNLLKLAQVSGVPAE LIVRMEAKLEGQLRSSGRSRRRESEMVEGWGESCV

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G21150	CO	EIP6, BBX32	EMF1-Interacting Protein 1, B-...		Lus10034830 [exp]	0	1
AT3G21150	CO	EIP6, BBX32	EMF1-Interacting Protein 1, B-...		Lus10033380 [exp]	1.4	0.9462
					Lus10013471 [exp]	2.0	0.9096
AT4G37260	MYB	ATMYB73	myb domain protein 73 (.1)		Lus10030336 [exp]	3.5	0.8902
					Lus10038478 [exp]	3.5	0.8691
AT5G13220	ZIM	JAS1, TIFY9, JA...	TIFY DOMAIN PROTEIN 9, JASMONA...		Lus10001803 [exp]	6.9	0.8127
AT2G22500		UCP5, ATPUMP5, ...	DICARBOXYLATE CARRIER 1, PLANT...		Lus10009270 [exp]	8.5	0.8879
AT1G60420			DC1 domain-containing protein ...		Lus10017252 [exp]	9.8	0.8449
AT5G66400		ATDI8, RAB18	RESPONSIVE TO ABA 18, ARABIDOP...		Lus10017977 [exp]	9.9	0.8619
					Lus10021347 [exp]	10.6	0.8465
AT3G17130			Plant invertase/pectin methyle...		Lus10017074 [exp]	10.8	0.8320

Compare expression of checked genes

Lus10034830 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.