Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G51580 363 / 7e-117 RNA-binding KH domain-containing protein (.1) AT5G15270 141 / 2e-35 RNA-binding KH domain-containing protein (.1.2) AT5G64390 127 / 2e-30 HEN4 HUA ENHANCER 4, RNA-binding KH domain-containing protein (.1.2.3) AT4G18375 117 / 4e-27 RNA-binding KH domain-containing protein (.1.2) AT5G53060 115 / 1e-26 RNA-binding KH domain-containing protein (.1.2) AT1G14170 100 / 2e-22 RNA-binding KH domain-containing protein (.1.2.3) AT3G04610 100 / 8e-22 FLK flowering locus KH domain, RNA-binding KH domain-containing protein (.1) AT2G22600 99 / 3e-21 RNA-binding KH domain-containing protein (.1) AT5G46190 93 / 2e-19 RNA-binding KH domain-containing protein (.1) AT5G09560 74 / 2e-13 RNA-binding KH domain-containing protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10007236 [exp] 208 / 2e-57 AT5G64390 249 / 6e-73 HUA ENHANCER 4, RNA-binding KH domain-containing protein (.1.2.3) Lus10028237 [exp] 205 / 2e-56 AT5G64390 243 / 8e-71 HUA ENHANCER 4, RNA-binding KH domain-containing protein (.1.2.3) Lus10035640 [exp] 154 / 8e-39 AT5G64390 337 / 8e-104 HUA ENHANCER 4, RNA-binding KH domain-containing protein (.1.2.3) Lus10005232 [exp] 148 / 2e-37 AT5G15270 634 / 0.0 RNA-binding KH domain-containing protein (.1.2) Lus10030689 [exp] 144 / 2e-36 AT5G15270 638 / 0.0 RNA-binding KH domain-containing protein (.1.2) Lus10022390 [exp] 144 / 6e-36 AT5G53060 692 / 0.0 RNA-binding KH domain-containing protein (.1.2) Lus10005915 [exp] 140 / 6e-35 AT5G53060 599 / 0.0 RNA-binding KH domain-containing protein (.1.2) Lus10010754 [exp] 137 / 1e-33 AT5G64390 311 / 5e-94 HUA ENHANCER 4, RNA-binding KH domain-containing protein (.1.2.3) Lus10036767 [exp] 132 / 4e-32 AT5G15270 483 / 2e-165 RNA-binding KH domain-containing protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G251700 [exp] 505 / 1e-171 AT1G51580 434 / 9e-145 RNA-binding KH domain-containing protein (.1) Potri.002G112200 [exp] 211 / 3e-59 AT5G53060 243 / 7e-71 RNA-binding KH domain-containing protein (.1.2) Potri.017G042500 [exp] 171 / 1e-44 AT5G64390 345 / 1e-106 HUA ENHANCER 4, RNA-binding KH domain-containing protein (.1.2.3) Potri.007G116300 [exp] 171 / 2e-44 AT5G64390 225 / 2e-62 HUA ENHANCER 4, RNA-binding KH domain-containing protein (.1.2.3) Potri.012G017200 [exp] 149 / 2e-37 AT5G53060 656 / 0.0 RNA-binding KH domain-containing protein (.1.2) Potri.015G011100 [exp] 145 / 3e-36 AT5G53060 699 / 0.0 RNA-binding KH domain-containing protein (.1.2) Potri.017G085500 [exp] 139 / 8e-35 AT5G15270 592 / 0.0 RNA-binding KH domain-containing protein (.1.2) Potri.004G123400 [exp] 134 / 6e-33 AT5G15270 596 / 0.0 RNA-binding KH domain-containing protein (.1.2) Potri.017G114400 [exp] 128 / 1e-30 AT5G15270 259 / 8e-78 RNA-binding KH domain-containing protein (.1.2) Potri.007G011900 [exp] 122 / 1e-28 AT2G22600 295 / 2e-87 RNA-binding KH domain-containing protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0007 [flax] [poplar] KH PF00013 [flax] [poplar] KH_1 KH domain
Representative CDS sequence Show only first row Show all	>Lus10034831 pacid=23142216 polypeptide=Lus10034831 locus=Lus10034831.g ID=Lus10034831.BGIv1.0 annot-version=v1.0 ATGGACTCTCCCTCCAATCTCTCCAAACTCCGGATTCTATGTCCCTCCGCCAGAACGGGTGCCGTTATAGGCAAAGGAGGCGCCACGGTCCGCCACATTC AGTCCGTCACCGCCGCCAAAATCCGCCTCCTTGACAATCCTCACGGCCACCCTTCCTGCGACGAACGCGTAATCCTCATATCGCATGTCAATAACCCCTT CTTCTCCTCCAACAACAGAAATCCTAGAGCACCAACGGCAGATGAAGCTTCTACTACTGCTACTATTAGTAGCGCGGCTGAGAACACCAATCGCAGTTCC TCGAATCCGCAGGAAAGCGGCGAGACTGATGGAAGCTCCAGCGTTCCCCCGAAAGGCAGTGGTGGAGAGTCCAGTGATGAAGGATGGGGCCCTGTACAGA AAGCGCTGGTTAGGGTTTTTGAGAAGATTGTGAAAGGGGATAGCGTGGAGGAGCTGGCTGAAGAAGTGGTGGTAGTTGGTAGGGTTTTAGTAGGAAATGA TCAGGCTGCTTGTCTGTTTGGTAGAGGAGGGAATGTTCTTGAGAAGATTATGGTGGAAAGTGGAGCTCAACAAGTCAGGCTTCTCCCTCGTGACCAGATA CCTCCTTGCGCTGCTCAGGGTGATGAACTCATTCTGATTACCGGAAGCTATTCAGCAGTAAGAAGAGCACTTCTATCATATTATGCTTGTCTTGAAGAAA TAAGCAAAGCAGAAGCTGCAAATCCTGGTAGTACTAAACCTTCCGGATTAGGGCACCATGGGCCTATGGATTTTCCTCAGCGAGGTTATGCTGACTATCA TCCGGGTGGTCACTCTCCTAATATGGGGCCAGAAAACTTTGACGGCCGTAGCAGGAGGGTTGTGGAAGAGGATGTTGTGTTTAAGTTGCTTTGCCAACTT GATAAAGTTGGAAGTTTGATAGGAAAAGGTGGCGCTGTAATAAAGACTTTGCAGAATGACACTGGTGCGTCTATCAAAATAGCTGATGTTCTTCCGGATT TACAAGAGCGACTTGTTATCATATCTGCACGTGAGGCATGGGAACTTAACTCTTATAAGTTGTGTTCTTTTCCTTCTTGCGCTTGTAGTGTCCTTAGATT GTCAGCCAGCATTGATCACATCCTTAATTTCTTGCAGAATTCAGAACAAAGACGCTCGCCTGCCCAGGATGGTGTTATACGAGTACAAACGAGAATTGCA GAAATCGGATACGAGCATGGTGCTCCTGTTATTGCTCGCCTTGTTGTACACTCACAGCAGATAGGTCGTTTACTGGGTAAAGGAGGTCAGATCATATCCG AAATGAGACAAGCTACTGGTGCACACATACGTATATTTCCAAAGGAACAAGTAGCCAAGCATGGAACGCCCCACGATGAAATTGTGCAGGTTGTTGGCAA TTTGCAGTGTGTACAAGATGCTCTGTACCATATAACAGGCAGGCTCAGAGAAATAATATTTCCAGTGAAGTCTTCGTTTCCCAACAATGGTGGACCACCA CCTTATCACTCCCAATTTTCGGATATGCCGCCTCCGCAATTTAGACCAAGACCTCATCCATCATCTACCGGTCATTATCATCAGCAGGATCACCAGCCAG GATTTTCATATGGTAATAATGAACACAATGGTGCGCCTGCATTGGAACGCTCTTATTCATATGGTGATGAACGTCAAGGAAACGGTCCTCCATATGAAAT ATCTCCAAGATTGTGGAATCCACAGCCATTTAGCAACGGAAATCCACATGGAGGTGGTGATGCTGGTCCTGGGTATGCAGCAAGAAACGTGCCTCCAACT AGTGGAGGCCAACCAGCGGGGATGCCAGTTGAAATGGTGATTCCTCCGAACTTTCTAAGCCATGTATATGGAGAGAAGAACAGCAATTTGAACCAGATCA TACAGATATCAGGTGCAACTATAGTAGTCCAGGAAGCAAAGACAGGAGGAGGTGAAGGTGTGGCAGTAATATCAGGAGCATCGGATCAAATCCATATAGC AAAGTGTCTTATTCATGGCTTCATACTCACAGGCCGTGCTGCAGCTTGA
AA sequence Show only first row Show all	>Lus10034831 pacid=23142216 polypeptide=Lus10034831 locus=Lus10034831.g ID=Lus10034831.BGIv1.0 annot-version=v1.0 MDSPSNLSKLRILCPSARTGAVIGKGGATVRHIQSVTAAKIRLLDNPHGHPSCDERVILISHVNNPFFSSNNRNPRAPTADEASTTATISSAAENTNRSS SNPQESGETDGSSSVPPKGSGGESSDEGWGPVQKALVRVFEKIVKGDSVEELAEEVVVVGRVLVGNDQAACLFGRGGNVLEKIMVESGAQQVRLLPRDQI PPCAAQGDELILITGSYSAVRRALLSYYACLEEISKAEAANPGSTKPSGLGHHGPMDFPQRGYADYHPGGHSPNMGPENFDGRSRRVVEEDVVFKLLCQL DKVGSLIGKGGAVIKTLQNDTGASIKIADVLPDLQERLVIISAREAWELNSYKLCSFPSCACSVLRLSASIDHILNFLQNSEQRRSPAQDGVIRVQTRIA EIGYEHGAPVIARLVVHSQQIGRLLGKGGQIISEMRQATGAHIRIFPKEQVAKHGTPHDEIVQVVGNLQCVQDALYHITGRLREIIFPVKSSFPNNGGPP PYHSQFSDMPPPQFRPRPHPSSTGHYHQQDHQPGFSYGNNEHNGAPALERSYSYGDERQGNGPPYEISPRLWNPQPFSNGNPHGGGDAGPGYAARNVPPT SGGQPAGMPVEMVIPPNFLSHVYGEKNSNLNQIIQISGATIVVQEAKTGGGEGVAVISGASDQIHIAKCLIHGFILTGRAAA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G51580			RNA-binding KH domain-containi...		Lus10034831 [exp]	0	1
AT1G49540		ELP2, AtELP2	Elongator subunit 2, elongator...		Lus10013487 [exp]	3.6	0.8415
AT4G12640			RNA recognition motif (RRM)-co...		Lus10025188 [exp]	8.9	0.7949
AT1G26580			unknown protein		Lus10036888 [exp]	13.5	0.7846
AT3G26990			ENTH/VHS family protein (.1)		Lus10032013 [exp]	16.0	0.7980
AT1G64260			MuDR family transposase (.1)		Lus10038037 [exp]	18.8	0.8042
AT4G12130			Glycine cleavage T-protein fam...		Lus10024566 [exp]	19.6	0.7342
AT2G15430		NRPE3A, NRPD3, ...	DNA-directed RNA polymerase fa...		Lus10002823 [exp]	22.9	0.8269
AT2G20330			Transducin/WD40 repeat-like su...		Lus10024967 [exp]	23.9	0.7830
AT5G57370			unknown protein		Lus10006974 [exp]	24.7	0.8046
AT5G55040			DNA-binding bromodomain-contai...		Lus10043121 [exp]	30.2	0.7340

Compare expression of checked genes

Lus10034831 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.