Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G50440 371 / 1e-127 RING/FYVE/PHD zinc finger superfamily protein (.1.2.3) AT3G20270 284 / 5e-88 lipid-binding serum glycoprotein family protein (.1.2.3) AT1G11020 152 / 4e-42 RING/FYVE/PHD zinc finger superfamily protein (.1) AT2G22120 132 / 1e-34 RING/FYVE/PHD zinc finger superfamily protein (.1.2) AT3G06330 45 / 7e-05 RING/U-box superfamily protein (.1.2.3) AT5G18760 43 / 0.0003 RING/U-box superfamily protein (.1) AT4G32670 42 / 0.0008 RING/FYVE/PHD zinc finger superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10033381 [exp] 368 / 7e-125 AT1G50440 340 / 1e-117 RING/FYVE/PHD zinc finger superfamily protein (.1.2.3) Lus10033053 [exp] 149 / 7e-41 AT1G11020 457 / 2e-163 RING/FYVE/PHD zinc finger superfamily protein (.1) Lus10016426 [exp] 135 / 1e-35 AT2G22120 543 / 0.0 RING/FYVE/PHD zinc finger superfamily protein (.1.2) Lus10019687 [exp] 134 / 4e-35 AT2G22120 546 / 0.0 RING/FYVE/PHD zinc finger superfamily protein (.1.2) Lus10017764 [exp] 117 / 2e-30 AT1G11020 254 / 3e-85 RING/FYVE/PHD zinc finger superfamily protein (.1) Lus10033985 [exp] 45 / 0.0002 AT3G06330 384 / 7e-126 RING/U-box superfamily protein (.1.2.3) Lus10019839 [exp] 44 / 0.0003 AT4G34100 1668 / 0.0 RING/U-box superfamily protein (.1.2) Lus10012791 [exp] 44 / 0.0004 AT3G06330 388 / 3e-132 RING/U-box superfamily protein (.1.2.3) Lus10012793 [exp] 42 / 0.0004 AT3G06330 192 / 8e-61 RING/U-box superfamily protein (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G252900 [exp] 423 / 7e-148 AT1G50440 370 / 5e-131 RING/FYVE/PHD zinc finger superfamily protein (.1.2.3) Potri.008G005800 [exp] 406 / 3e-141 AT1G50440 374 / 2e-132 RING/FYVE/PHD zinc finger superfamily protein (.1.2.3) Potri.008G004500 [exp] 344 / 3e-117 AT3G20270 308 / 4e-101 lipid-binding serum glycoprotein family protein (.1.2.3) Potri.018G073400 [exp] 160 / 2e-45 AT1G11020 389 / 2e-136 RING/FYVE/PHD zinc finger superfamily protein (.1) Potri.006G154800 [exp] 157 / 7e-44 AT1G11020 406 / 4e-143 RING/FYVE/PHD zinc finger superfamily protein (.1) Potri.007G085900 [exp] 137 / 3e-37 AT2G22120 388 / 4e-136 RING/FYVE/PHD zinc finger superfamily protein (.1.2) Potri.005G081500 [exp] 135 / 7e-36 AT2G22120 521 / 0.0 RING/FYVE/PHD zinc finger superfamily protein (.1.2) Potri.019G111700 [exp] 47 / 2e-05 AT2G02960 156 / 1e-46 RING/FYVE/PHD zinc finger superfamily protein (.1.2.3.4.5) Potri.013G126600 [exp] 44 / 9e-05 AT2G02960 159 / 9e-48 RING/FYVE/PHD zinc finger superfamily protein (.1.2.3.4.5) Potri.008G127400 [exp] 43 / 0.0003 AT2G01275 266 / 1e-89 RING/FYVE/PHD zinc finger superfamily protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0229 [flax] [poplar] RING PF00097 [flax] [poplar] zf-C3HC4 Zinc finger, C3HC4 type (RING finger)
Representative CDS sequence Show only first row Show all	>Lus10034832 pacid=23142307 polypeptide=Lus10034832 locus=Lus10034832.g ID=Lus10034832.BGIv1.0 annot-version=v1.0 ATGACAGATAGTACTGAAGATGACTTTGTAGCGTCACTTGGTGATTATACATTTGGAAACCTTCCCGATCATCTTCTGATAGACATATTCGTCCGAATCC CTGTTTCCGAATGGGTCCAGTTGGCTTGCGTCAGAAAGCAATGGGCTAATTTGTTTCAGGGAGAATGCTTGTGGCATGCTGCTCTTCACACTACTTATCC TTCTTCTGGCCTAGCTAAAAGATGGCCAGGACCCATACCCCAAGGTTTGAGCAAAAGGAGATATACAGCTTTACACGTGAGTAAACACATCTTTGGCAAG GTAGATGAAATTGCTGGCCACACATACTTGTTTCTGAAAGAGCAACTTGAGCGTTCCACGATGCCGCCTCCTTCTGGCATACTTCACGGAACCATAATTG ATCAGTTCATTGCTTGCGGGAAATCCAGAGATATCGCTCATGAGCTTGCGTCGCAAATTTGGTTGGCTGTTCTCGACAACCTGGAGGAGAATGAGCGCAC ATTTCAGTTGCTTAAATGTATTGCACATGAAGGGGATGTATTTCTTCCATACCCATACGCAAAATCTATTAAGGTGCAGTGGCGGGTGTTTGAGAAGCTG TTCACTGATTTTCGCGACTGTTTAGATCATTCGGAGTATTACGAGGCCTTGGCGTGTGCAAAGAACAGTTCTGACTCAACACCGTCCGCTATGCAATTAG TTTTACATGATTGTCATAAGGAAGACGCTTCAGAAAGTGAACCCATCTTGTGCCAGTCTGACAATTCACGACAATCCGATGGATCATCATCTTCACGTGA GATTACTACATTAGAACGTGGATGTGTTGTTACTGATGATGAGTTACAAAGTCTTTGCGTTGATGAAACTTGCCATCTGATCAACCCAGACCAGCCACTC TGCCGCATTTGTCTTGATTATGAAGGGGATGACTTAATAGCACCATGTCATTGCAAAGGCACTCAGAAGTATGTTCACAGATCCTGTCTCGATAATTGGA GATCCACAAAGGAGGGATTTGCTTTTGCCCACTGTACTGAGTGCCGGGCGTTGTTTGTATTGCGTGCAAATGTCCCACCTGATCGCTGGTGGTTGAGATT GAAGTTTCAGTTCCTTGTTGCTCGGGACCATGCGTTCATTTTTATTGCTGTTCAACTGATCGTTGCATTCTTGGGAATTCTGGTGTACAAGTTCTATGGG CAGGAACTCAGAGAAATGTTTGGCTATGAAGAGCATCCTTATGGGTTTTATACAATGGCCGTTTTAGCAATTGTCCTGGTGGGCTTGCTCTATGGTTTTT TCATTGCTATAATATGTGGACAAAGGATCAACGAGCGCCACTACCATGTTCTTGCCAAACAAGAGCTAACAAAGGAGTACGTGGTGGAAGATCGAGACGC CGGCAAGAATGTACCCGAACTTGATGAGAGCCATATTACGGAACTAAGGATGTTAGGCCTCTACTAA
AA sequence Show only first row Show all	>Lus10034832 pacid=23142307 polypeptide=Lus10034832 locus=Lus10034832.g ID=Lus10034832.BGIv1.0 annot-version=v1.0 MTDSTEDDFVASLGDYTFGNLPDHLLIDIFVRIPVSEWVQLACVRKQWANLFQGECLWHAALHTTYPSSGLAKRWPGPIPQGLSKRRYTALHVSKHIFGK VDEIAGHTYLFLKEQLERSTMPPPSGILHGTIIDQFIACGKSRDIAHELASQIWLAVLDNLEENERTFQLLKCIAHEGDVFLPYPYAKSIKVQWRVFEKL FTDFRDCLDHSEYYEALACAKNSSDSTPSAMQLVLHDCHKEDASESEPILCQSDNSRQSDGSSSSREITTLERGCVVTDDELQSLCVDETCHLINPDQPL CRICLDYEGDDLIAPCHCKGTQKYVHRSCLDNWRSTKEGFAFAHCTECRALFVLRANVPPDRWWLRLKFQFLVARDHAFIFIAVQLIVAFLGILVYKFYG QELREMFGYEEHPYGFYTMAVLAIVLVGLLYGFFIAIICGQRINERHYHVLAKQELTKEYVVEDRDAGKNVPELDESHITELRMLGLY

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G50440			RING/FYVE/PHD zinc finger supe...		Lus10034832 [exp]	0	1
AT1G77930			Chaperone DnaJ-domain superfam...		Lus10001296 [exp]	2.0	0.9090
AT5G61670			unknown protein		Lus10016713 [exp]	3.5	0.8852
AT1G77930			Chaperone DnaJ-domain superfam...		Lus10012702 [exp]	4.0	0.8885
AT1G03250			unknown protein		Lus10012370 [exp]	7.4	0.8805
AT1G48840			Plant protein of unknown funct...		Lus10020973 [exp]	8.8	0.8697
AT1G13990			unknown protein		Lus10036787 [exp]	9.9	0.8607
AT4G03020			transducin family protein / WD...		Lus10042682 [exp]	11.5	0.8805
AT3G10970			Haloacid dehalogenase-like hyd...		Lus10034213 [exp]	15.9	0.8341
AT4G38060			unknown protein		Lus10032845 [exp]	16.3	0.8423
AT3G26890			unknown protein		Lus10035170 [exp]	16.5	0.8358

Compare expression of checked genes

Lus10034832 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.