Plant FIBer expression Database

Lus10034834 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT1G51080 168 / 1e-50 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.008G004800
[exp]
191 / 1e-59 AT1G51080 171 / 6e-52 unknown protein
PFAM info
Representative CDS sequence
>Lus10034834 pacid=23142316 polypeptide=Lus10034834 locus=Lus10034834.g ID=Lus10034834.BGIv1.0 annot-version=v1.0
ATGATTTTCAGCGTACTTCATCCAGCTCCACCCTCACTCCCCATATTCACTTGTTCTTTCAAGCCCGCCGCCGCAACATACGGCCACCGGTGGAAGCCGC
TATCCAAGCTTCCAGTAGCATTGACGGCGAAATCACCCCCTCCGCCGCATCCAGCGAGAGACAAAGTAATAGACTTCGGCAAGTACAGAGGTAAAATGCT
GGGTGCCATCCCATCCTCCTACCTCAAATGGATCTCCGCCAACCTCCGCGCCGGCGACACCCTCCACTGGGCCCAATTCGCCGACCAAGTCCTCCAGGAC
CCCGTTTACCGCGACCGCATCGAGTGGGAATTTGCCAGCCGAGTCTTGGACGGCAGCTCTCCTTCTTCTGCCTCGTTTTCCGGAACTGACGCCGTGTCGC
AGCTGCTGGAGATCAGCCAGCGATTCGGATGGGATAACGACGACAAAATCGGGTGGAGCAGGGTTGATTTCGAGCTGCTGGGTACGAGCAAGGGAGGCCG
GATCCCGAGATTAGAGTCTGGTAACGCAGAGAAGAAGAAGAAGAAGGAGGAAGGTGAAATTAGAGCGGGGAAGGGAGAAAGGGATGGTGGTGGCGGTGGT
GGCCGCCGCCGTGGAAGCGGGGGAGATGTAGTTCTGGAGAGCGAGGAGCGGAGGAGGGAAGAGAGGCGAGAGAGGATGAGAATCAGAAAAGCGGCGGCGG
AGGAGGACAAATTGGGGATTCTGGGAAGGGACGAGAGTAGATTGATCAAAGAGGGTTTATTTGAAGGAATGGGCGGAGATCGGACGGAAAAGATTAACAG
TCGGTTTCCTGGACGGGAAGGGTTGTTGAAGAAGGTGCTCAACGGCAGGAGATACTTGTAA
AA sequence
>Lus10034834 pacid=23142316 polypeptide=Lus10034834 locus=Lus10034834.g ID=Lus10034834.BGIv1.0 annot-version=v1.0
MIFSVLHPAPPSLPIFTCSFKPAAATYGHRWKPLSKLPVALTAKSPPPPHPARDKVIDFGKYRGKMLGAIPSSYLKWISANLRAGDTLHWAQFADQVLQD
PVYRDRIEWEFASRVLDGSSPSSASFSGTDAVSQLLEISQRFGWDNDDKIGWSRVDFELLGTSKGGRIPRLESGNAEKKKKKEEGEIRAGKGERDGGGGG
GRRRGSGGDVVLESEERRREERRERMRIRKAAAEEDKLGILGRDESRLIKEGLFEGMGGDRTEKINSRFPGREGLLKKVLNGRRYL

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT1G51080 unknown protein Lus10034834
[exp]
0 1
AT1G70200 RNA-binding (RRM/RBD/RNP motif... Lus10029195
[exp]
3.7 0.9217
AT1G67280 Glyoxalase/Bleomycin resistanc... Lus10038612
[exp]
5.3 0.9212
AT1G12570 Glucose-methanol-choline (GMC)... Lus10024487
[exp]
13.4 0.8737
AT5G23310 FSD3 Fe superoxide dismutase 3 (.1) Lus10010174
[exp]
16.0 0.8898
AT3G18390 EMB1865 embryo defective 1865, CRS1 / ... Lus10009031
[exp]
19.7 0.8776
AT1G78570 ATRHM1, RHM1, R... REPRESSOR OF LRX1 1, ARABIDOPS... Lus10010942
[exp]
20.2 0.8383
AT5G63630 P-loop containing nucleoside t... Lus10004017
[exp]
24.2 0.8729
Lus10031949
[exp]
24.6 0.8045
AT5G04590 SIR sulfite reductase (.1) Lus10027360
[exp]
25.2 0.8758
AT5G59510 RTFL5, DVL18 DEVIL 18, ROTUNDIFOLIA like 5 ... Lus10001569
[exp]
27.1 0.8396

Lus10034834 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.