Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G78900 1183 / 0 VHA-A vacuolar ATP synthase subunit A (.1.2) AT5G08690 120 / 2e-28 ATP synthase alpha/beta family protein (.1) AT5G08670 119 / 2e-28 ATP synthase alpha/beta family protein (.1) AT5G08680 119 / 3e-28 ATP synthase alpha/beta family protein (.1) ATCG00480 104 / 2e-23 ATCG00480.1, ATPB ATP synthase subunit beta (.1) AT4G38510 98 / 2e-21 ATPase, V1 complex, subunit B protein (.1.2.3.4.5) AT1G76030 96 / 1e-20 ATPase, V1 complex, subunit B protein (.1) AT1G20260 96 / 1e-20 ATPase, V1 complex, subunit B protein (.1) ATCG00120 84 / 8e-17 ATCG00120.1, ATPA ATP synthase subunit alpha (.1) ATMG01190 74 / 2e-13 ATMG01190.1, ATP1 ATP synthase subunit 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037321 [exp] 1246 / 0 AT1G78900 1214 / 0.0 vacuolar ATP synthase subunit A (.1.2) Lus10035737 [exp] 1246 / 0 AT1G78900 1214 / 0.0 vacuolar ATP synthase subunit A (.1.2) Lus10033382 [exp] 1246 / 0 AT1G78900 1199 / 0.0 vacuolar ATP synthase subunit A (.1.2) Lus10035264 [exp] 118 / 9e-28 AT5G08680 925 / 0.0 ATP synthase alpha/beta family protein (.1) Lus10034631 [exp] 118 / 1e-27 AT5G08680 928 / 0.0 ATP synthase alpha/beta family protein (.1) Lus10035263 [exp] 117 / 2e-27 AT5G08680 782 / 0.0 ATP synthase alpha/beta family protein (.1) Lus10009173 [exp] 103 / 5e-23 ATCG00480 890 / 0.0 ATP synthase subunit beta (.1) Lus10024002 [exp] 100 / 4e-22 AT4G38510 954 / 0.0 ATPase, V1 complex, subunit B protein (.1.2.3.4.5) Lus10027827 [exp] 100 / 4e-22 AT4G38510 959 / 0.0 ATPase, V1 complex, subunit B protein (.1.2.3.4.5)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G005000 [exp] 1203 / 0 AT1G78900 1184 / 0.0 vacuolar ATP synthase subunit A (.1.2) Potri.010G253500 [exp] 1197 / 0 AT1G78900 1184 / 0.0 vacuolar ATP synthase subunit A (.1.2) Potri.008G126600 [exp] 119 / 4e-28 AT5G08690 892 / 0.0 ATP synthase alpha/beta family protein (.1) Potri.010G116600 [exp] 116 / 4e-27 AT5G08690 871 / 0.0 ATP synthase alpha/beta family protein (.1) Potri.013G162800 [exp] 105 / 7e-24 ATCG00480 927 / 0.0 ATP synthase subunit beta (.1) Potri.009G137800 [exp] 98 / 2e-21 AT4G38510 966 / 0.0 ATPase, V1 complex, subunit B protein (.1.2.3.4.5) Potri.004G177500 [exp] 97 / 3e-21 AT4G38510 962 / 0.0 ATPase, V1 complex, subunit B protein (.1.2.3.4.5) Potri.013G138000 [exp] 78 / 6e-15 ATCG00120 933 / 0.0 ATP synthase subunit alpha (.1) Potri.007G062242 [exp] 75 / 7e-14 ATMG01190 924 / 0.0 ATP synthase subunit 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [flax] [poplar] P-loop_NTPase PF00006 [flax] [poplar] ATP-synt_ab ATP synthase alpha/beta family, nucleotide-binding domain CL0275 [flax] [poplar] HAS-barrel PF02874 [flax] [poplar] ATP-synt_ab_N ATP synthase alpha/beta family, beta-barrel domain CL0275 [flax] [poplar] PF00306 [flax] [poplar] ATP-synt_ab_C ATP synthase alpha/beta chain, C terminal domain
Representative CDS sequence Show only first row Show all	>Lus10034836 pacid=23142249 polypeptide=Lus10034836 locus=Lus10034836.g ID=Lus10034836.BGIv1.0 annot-version=v1.0 ATGCCGTCGATTTACGGAGCTCGATTGACTACCTTCGAAGATTCAGAGAAGGAAAGCGAGTATGGATACGTCCGGAAGGTATCTGGGCCTGTCGTTGTTG CGGATGGGATGGCTGGTGCTGCTATGTACGAATTGGTTCGAGTTGGTCATGATAATCTAATTGGGGAAATCATTCGGTTGGAAGGGGATTCAGCCACAAT TCAAGTGTACGAGGAAACGGCTGGTTTGATGGTGAATGATCCTGTCCTCCGGACACGCAAGCCTCTATCCGTGGAGCTGGGACCAGGAATATTGGGGAAT ATCTTTGATGGAATCCAGAGGCCGCTGAAAACCATTGCAAAGTTATCTTGTGATGTCTATATTCCTCGTGGTGTTTCTGTCCCTGCCCTTGACAAAGATA TTCTCTGGGAATTCCAGCCTAAAAAATTGGGTGAGGGAGATGTTTTGACTGGTGGAGACTTGTATGCTACTGTTTTCGAGAACAGTCTTATGCAGCACCA TGTGGCCCTCCCCCCTGACGCCATGGGAAAGATTTCATACATTGCACCTCCTGGTCAATATTCTTTGAAGGATACGGTGTTGGAACTTGAGTTCCAGGGT GAGAAGAAGAAAATTACCATGCTTCAGACTTGGCCTGTTCGTACACCAAGACCTGTTGCATCAAAGCTCGCTGCTGATACCCCTCTCCTCACTGGGCAGC GTGTTCTTGATGCTCTTTTCCCTTCCGTTCTCGGTGGGACTTGTGCCATTCCTGGAGCATTTGGATGCGGGAAAACTGTCATTAGTCAAGCTCTTTCCAA GTACTCCAATTCCGATACTGTTGTCTATGTTGGTTGTGGGGAGAGAGGAAATGAAATGGCTGAGGTACTTATGGATTTCCCACAATTGACAATGACGTTA CCCGATGGCCGCGAGGAATCTGTCATGAAGCGTACAACACTTGTTGCGAATACATCAAACATGCCTGTCGCTGCTCGTGAGGCTTCAATTTATACAGGAA TTACTATAGCTGAGTACTTCAGGGATATGGGCTACAATGTTAGTATGATGGCAGATTCAACATCACGTTGGGCAGAAGCTTTGCGTGAAATTTCAGGACG TTTGGCTGAAATGCCTGCAGATAGTGGATATCCTGCTTATCTGGCAGCACGTTTAGCTTCATTTTATGAACGTGCTGGCAAGGTCAAATGTCTTGGTGGT CCAGAGCGTAATGGCAGTGTCACAATTGTTGGTGCCGTTTCTCCACCAGGAGGAGATTTTTCTGATCCCGTCACATCTGCTACACTCAGCATTGTCCAGG TTTTCTGGGGTCTGGACAAGAAACTTGCACAGAGGAAACATTTCCCTTCTGTAAATTGGCTGATCTCCTACTCGAAGTACTCTTCGGCATTGGAACCTTT CTACGAGCAATTTGATCCTGATTTTATCAACATCAGAACCAAGGCCAGAGAAGTGCTACAAAGAGAAGACGACTTGAATGAAATTGTACAGCTTGTGGGG AAGGATGCTTTGGCTGAAGGAGACAAGATTACTTTAGAGACTGCAAAGCTTTTGAGGGAGGATTATCTCGCCCAGAATGCATTTACCCCATATGATAAAT TCTGCCCATTCTACAAATCCGTTTGGATGATGCGGAACATAATCCACTTCTACAATTTGGCCAACCAGGCTGTGGAGAGAGGAGCTGGTATGGATGGTCA GAAGATCACATACACCCTTATCAAGCACCGGATGGGAGACCTTTTCTACCGCCTAGTGTCTCAGAAATTTGAGGATCCGGCGGAGGGAGAACCTGCTTTG GTGGCGAAATTCCAGAAGTTGAGGGATGACCTTACTGCTGGTTTCCGTGCTCTGGAAGATGAGACCCGGTAA
AA sequence Show only first row Show all	>Lus10034836 pacid=23142249 polypeptide=Lus10034836 locus=Lus10034836.g ID=Lus10034836.BGIv1.0 annot-version=v1.0 MPSIYGARLTTFEDSEKESEYGYVRKVSGPVVVADGMAGAAMYELVRVGHDNLIGEIIRLEGDSATIQVYEETAGLMVNDPVLRTRKPLSVELGPGILGN IFDGIQRPLKTIAKLSCDVYIPRGVSVPALDKDILWEFQPKKLGEGDVLTGGDLYATVFENSLMQHHVALPPDAMGKISYIAPPGQYSLKDTVLELEFQG EKKKITMLQTWPVRTPRPVASKLAADTPLLTGQRVLDALFPSVLGGTCAIPGAFGCGKTVISQALSKYSNSDTVVYVGCGERGNEMAEVLMDFPQLTMTL PDGREESVMKRTTLVANTSNMPVAAREASIYTGITIAEYFRDMGYNVSMMADSTSRWAEALREISGRLAEMPADSGYPAYLAARLASFYERAGKVKCLGG PERNGSVTIVGAVSPPGGDFSDPVTSATLSIVQVFWGLDKKLAQRKHFPSVNWLISYSKYSSALEPFYEQFDPDFINIRTKAREVLQREDDLNEIVQLVG KDALAEGDKITLETAKLLREDYLAQNAFTPYDKFCPFYKSVWMMRNIIHFYNLANQAVERGAGMDGQKITYTLIKHRMGDLFYRLVSQKFEDPAEGEPAL VAKFQKLRDDLTAGFRALEDETR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G78900		VHA-A	vacuolar ATP synthase subunit ...		Lus10034836 [exp]	0	1
AT5G17310		AtUGP2, UGP2	UDP-glucose pyrophosphorylase ...		Lus10041971 [exp]	2.0	0.9547
AT3G25860		PLE2, LTA2	PLASTID E2 SUBUNIT OF PYRUVATE...		Lus10034304 [exp]	4.5	0.9487
AT2G05990		ENR1, MOD1	MOSAIC DEATH 1, ENOYL-ACP REDU...		Lus10021040 [exp]	6.3	0.9353
AT5G35360		CAC2	acetyl Co-enzyme a carboxylase...		Lus10042899 [exp]	6.5	0.9391
AT3G47520		pNAD-MDH, MDH	plastidic NAD-dependent malate...		Lus10019096 [exp]	6.9	0.9464
AT5G35360		CAC2	acetyl Co-enzyme a carboxylase...		Lus10017534 [exp]	7.5	0.9386
AT3G03050		RHD7, ATCSLD3, ...	ROOT HAIR DEFECTIVE 7, KOJAK, ...		Lus10038008 [exp]	8.9	0.9272
AT2G34590			Transketolase family protein (...		Lus10023304 [exp]	9.9	0.9293
AT2G30200		EMB3147	EMBRYO DEFECTIVE 3147, catalyt...		Lus10042255 [exp]	10.0	0.9439
AT5G28850			Calcium-binding EF-hand family...		Lus10032772 [exp]	10.2	0.9190

Compare expression of checked genes

Lus10034836 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.