Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G16810 107 / 1e-30 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10033383 [exp] 207 / 2e-70 AT1G16810 136 / 4e-42 unknown protein Lus10026960 [exp] 96 / 3e-26 AT1G16810 110 / 7e-32 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G253400 [exp] 133 / 7e-41 AT1G16810 113 / 5e-33 unknown protein Potri.005G174400 [exp] 105 / 8e-30 AT1G16810 121 / 3e-36 unknown protein
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF08555 [flax] [poplar] DUF1754 Eukaryotic family of unknown function (DUF1754)
Representative CDS sequence Show only first row Show all	>Lus10034837 pacid=23142145 polypeptide=Lus10034837 locus=Lus10034837.g ID=Lus10034837.BGIv1.0 annot-version=v1.0 ATGTCTGCTTTCGACAATGTGGTTGGTGGGAAGCTGAAGCTGAAGGGTAAGGCTTTGGATGTAAAAGCTGGTGGTACAAAGAAGAAAAAGAAACAGAAGA AAATCAGGGATGAGGTTGCTCAAGTAATCCAAACTGAGCTATCAGCAGATCAAGTTACTGAAGAATCAGCTGATGTGAATGAAGAGGTTGCAGAAGGCAA CAGCAAACTGAGCAATGAAGGTAAGTCTGGAAGTTACAAAGATCAGATGACGCCTGCGGAGAGACGATATATAGAACAGAGGGAGAGGCTGGACCGACAC AGCATGGCGAAAGAAGCGAACAAATCGCACAGAGATAGGATCCAAGACTTCAACCAGTATCTGGCAAATATGAGTGAACACTATGACATTCCTAAAGTTG GTCCTGGGTGA
AA sequence Show only first row Show all	>Lus10034837 pacid=23142145 polypeptide=Lus10034837 locus=Lus10034837.g ID=Lus10034837.BGIv1.0 annot-version=v1.0 MSAFDNVVGGKLKLKGKALDVKAGGTKKKKKQKKIRDEVAQVIQTELSADQVTEESADVNEEVAEGNSKLSNEGKSGSYKDQMTPAERRYIEQRERLDRH SMAKEANKSHRDRIQDFNQYLANMSEHYDIPKVGPG

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G16810			unknown protein		Lus10034837 [exp]	0	1
AT5G47090			unknown protein		Lus10035047 [exp]	1.4	0.9276
AT5G11970			Protein of unknown function (D...		Lus10021581 [exp]	2.0	0.9142
AT5G11500			unknown protein		Lus10037899 [exp]	2.2	0.9282
AT2G37480			unknown protein		Lus10003982 [exp]	2.4	0.9221
AT5G63030		GRXC1	glutaredoxin C1, Thioredoxin s...		Lus10001237 [exp]	4.9	0.9129
AT4G14385			unknown protein		Lus10003559 [exp]	14.1	0.9085
AT3G24050	GATA	GATA1	GATA transcription factor 1 (....		Lus10011762 [exp]	15.5	0.8793
AT1G15270			Translation machinery associat...		Lus10037543 [exp]	16.0	0.8936
AT4G08230			glycine-rich protein (.1.2)		Lus10041619 [exp]	17.5	0.8917
AT3G52220			unknown protein		Lus10038762 [exp]	21.1	0.9137

Compare expression of checked genes

Lus10034837 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.