Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G38540 249 / 9e-79 FAD/NAD(P)-binding oxidoreductase family protein (.1) AT5G05320 242 / 4e-76 FAD/NAD(P)-binding oxidoreductase family protein (.1) AT4G15760 205 / 1e-61 MO1 monooxygenase 1 (.1.2) AT2G35660 182 / 9e-53 CTF2B, CTF2A FAD/NAD(P)-binding oxidoreductase family protein (.1), FAD/NAD(P)-binding oxidoreductase family protein (.2), FAD/NAD(P)-binding oxidoreductase family protein (.3) AT2G29720 175 / 4e-50 CTF2B FAD/NAD(P)-binding oxidoreductase family protein (.1) AT4G15765 94 / 9e-22 FAD/NAD(P)-binding oxidoreductase family protein (.1) AT5G67030 59 / 4e-09 NPQ2, LOS6, IBS3, ATZEP, ATABA1, ABA1 NON-PHOTOCHEMICAL QUENCHING 2, IMPAIRED IN BABA-INDUCED STERILITY 3, ARABIDOPSIS THALIANA ZEAXANTHIN EPOXIDASE, ARABIDOPSIS THALIANA ABA DEFICIENT 1, ABA DEFICIENT 1, zeaxanthin epoxidase (ZEP) (ABA1) (.1), zeaxanthin epoxidase (ZEP) (ABA1) (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10033385 [exp] 733 / 0 AT5G05320 284 / 3e-92 FAD/NAD(P)-binding oxidoreductase family protein (.1) Lus10033366 [exp] 506 / 3e-179 AT4G38540 284 / 1e-92 FAD/NAD(P)-binding oxidoreductase family protein (.1) Lus10034817 [exp] 501 / 1e-177 AT4G38540 290 / 8e-95 FAD/NAD(P)-binding oxidoreductase family protein (.1) Lus10034816 [exp] 489 / 9e-172 AT5G05320 284 / 7e-92 FAD/NAD(P)-binding oxidoreductase family protein (.1) Lus10034467 [exp] 251 / 2e-79 AT4G38540 418 / 4e-145 FAD/NAD(P)-binding oxidoreductase family protein (.1) Lus10019729 [exp] 245 / 4e-77 AT4G38540 400 / 4e-138 FAD/NAD(P)-binding oxidoreductase family protein (.1) Lus10034475 [exp] 230 / 3e-71 AT5G05320 407 / 2e-140 FAD/NAD(P)-binding oxidoreductase family protein (.1) Lus10016392 [exp] 219 / 6e-67 AT5G05320 377 / 4e-129 FAD/NAD(P)-binding oxidoreductase family protein (.1) Lus10016398 [exp] 219 / 8e-66 AT4G38540 358 / 1e-119 FAD/NAD(P)-binding oxidoreductase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G307500 [exp] 496 / 2e-175 AT4G38540 295 / 1e-96 FAD/NAD(P)-binding oxidoreductase family protein (.1) Potri.019G003400 [exp] 489 / 8e-173 AT4G38540 283 / 4e-92 FAD/NAD(P)-binding oxidoreductase family protein (.1) Potri.019G003600 [exp] 476 / 3e-167 AT4G38540 277 / 3e-89 FAD/NAD(P)-binding oxidoreductase family protein (.1) Potri.019G003200 [exp] 453 / 7e-159 AT4G38540 268 / 2e-86 FAD/NAD(P)-binding oxidoreductase family protein (.1) Potri.019G003800 [exp] 450 / 2e-157 AT5G05320 273 / 3e-88 FAD/NAD(P)-binding oxidoreductase family protein (.1) Potri.019G003500 [exp] 438 / 9e-153 AT5G05320 273 / 4e-88 FAD/NAD(P)-binding oxidoreductase family protein (.1) Potri.019G003700 [exp] 438 / 1e-152 AT4G38540 256 / 9e-82 FAD/NAD(P)-binding oxidoreductase family protein (.1) Potri.019G003300 [exp] 437 / 4e-152 AT5G05320 272 / 1e-87 FAD/NAD(P)-binding oxidoreductase family protein (.1) Potri.004G176950 [exp] 248 / 3e-78 AT4G38540 413 / 4e-143 FAD/NAD(P)-binding oxidoreductase family protein (.1) Potri.004G176750 [exp] 243 / 2e-76 AT4G38540 419 / 4e-145 FAD/NAD(P)-binding oxidoreductase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF01494 [flax] [poplar] FAD_binding_3 FAD binding domain
Representative CDS sequence Show only first row Show all	>Lus10034838 pacid=23142229 polypeptide=Lus10034838 locus=Lus10034838.g ID=Lus10034838.BGIv1.0 annot-version=v1.0 ATGGGAAGCATTATAGAAGAAGAAGTGGTGATAGTGGGAGCAGGGATAGCTGGTCTAGCTACTGCTCTGGCCCTCAAGAGAGTTGGGATTAAGGCACTTG TGCTTGAGAAAGCTGATGCCCTCAGAACCACCGGAGCCGCTTTGAATCTGTTCCCAAATGCTTGGATTGCGCTTGATTCTCTCGGCGTCTCTCATAAGCT TAAACCCCTTTACCCTCCTTTGACCACTGGATCTGTTACCAATATCACAACTGGATCTGTCAAGCAGATTTCTCTCACTGGCGTCTCCTCGGGAGGGGAA GGACCAAGACCAGTTCACCGTAAGATCCTGCTAGAGGCTCTGGCTGAGGAGCTACCGACTGAATCAATCAGATTCTCATCTCACATCACTTCTATTGAAA CCCAACAACTCCATACTGCTTCCCCTGCTTCTCTTGCAGTTGTGCATTTGCAAGATGGAAGCACCATCAGGTCCAAGGTTTTGATAGGGTGCGATGGACT TCACTCAGTGGTTGCACAATGGCTAGGACTCTCATCTCCTATCCATTCTGGCCGATCCGCGGTTCGTGGACTGGCGGTCTACCCTCAACGACATGGATTC GCACGTTCAGCTGAGCAGTTTATCGACGTTGGCAAAAGGGGCGGCTTGGTTCCCTTGAATGACACTGAGCTTTTCTGGTTCTTGACTTGTCAAGGAGACC ACAGGGCATACGACCCGATCACAATTCAGAAAGAAGTGCTGGAGAAACACGCCTCCAACTTCCCAACAGTCTACCTAGACGTGGTCCGCAACTCGGACCT TTCGTCCCTATCGTGGGCGCCACTGATGCTCCGAAATCCGTGGAACATCATAGTCGGAAACCTGAGCAGAGGGAACATCACAGTGGCAGGAGATGCAATG CACCCGATGACGCCCGATCTGGCTCAAGGCGGGTGCTGTGCTCTAGAAGATGCTGTGGTTTTGGGGAGGCAGATTGGGAATTCGTTCCTGAAGAACGGCA AGTCGCTGGTCCCGGAAGAGATGGCGTCAGTGTTGGATGGGTATGCGAAGGAGAGGAGATGGAGGGCGGCAGGGTTGGTTACTGGTTCGTACATATCGGG TTGGGTTCAGCAGAGTGGGCAGAATTGGTGGAGGAAGCTGCTCAGGATTATCTTCTATAGTTACTTGTTTGTCGCACTTGCTAGGTTGATCAGGTATAAT TGTGGCAAGCTTCCTGAGGTTGTTGATCACGACAGGAAATCTGATGGGTCGAGTAAGCTGGATTAG
AA sequence Show only first row Show all	>Lus10034838 pacid=23142229 polypeptide=Lus10034838 locus=Lus10034838.g ID=Lus10034838.BGIv1.0 annot-version=v1.0 MGSIIEEEVVIVGAGIAGLATALALKRVGIKALVLEKADALRTTGAALNLFPNAWIALDSLGVSHKLKPLYPPLTTGSVTNITTGSVKQISLTGVSSGGE GPRPVHRKILLEALAEELPTESIRFSSHITSIETQQLHTASPASLAVVHLQDGSTIRSKVLIGCDGLHSVVAQWLGLSSPIHSGRSAVRGLAVYPQRHGF ARSAEQFIDVGKRGGLVPLNDTELFWFLTCQGDHRAYDPITIQKEVLEKHASNFPTVYLDVVRNSDLSSLSWAPLMLRNPWNIIVGNLSRGNITVAGDAM HPMTPDLAQGGCCALEDAVVLGRQIGNSFLKNGKSLVPEEMASVLDGYAKERRWRAAGLVTGSYISGWVQQSGQNWWRKLLRIIFYSYLFVALARLIRYN CGKLPEVVDHDRKSDGSSKLD

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G05320			FAD/NAD(P)-binding oxidoreduct...		Lus10034838 [exp]	0	1
AT4G38540			FAD/NAD(P)-binding oxidoreduct...		Lus10034817 [exp]	1.0	0.9942
AT3G29590		AT5MAT	HXXXD-type acyl-transferase fa...		Lus10041658 [exp]	2.6	0.9848
					Lus10000859 [exp]	2.8	0.9855
AT3G61510		AT-ACS1, ACS1	ARABIDOPSIS THALIANA 1-AMINOCY...		Lus10036396 [exp]	4.2	0.9905
AT5G67550			unknown protein		Lus10025583 [exp]	5.5	0.9854
AT4G04450	WRKY	ATWRKY42, WRKY4...	WRKY family transcription fact...		Lus10015546 [exp]	5.7	0.9891
AT1G60690			NAD(P)-linked oxidoreductase s...		Lus10006105 [exp]	6.5	0.9797
AT3G51680		AtSDR2	short-chain dehydrogenase/redu...		Lus10021312 [exp]	7.7	0.9818
AT4G37370		CYP81D8	"cytochrome P450, family 81, s...		Lus10027614 [exp]	9.4	0.9825
AT5G01250			alpha 1,4-glycosyltransferase ...		Lus10027770 [exp]	10.9	0.9778

Compare expression of checked genes

Lus10034838 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.