Plant FIBer expression Database

Lus10034841 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT1G51650 113 / 2e-34 ATP synthase epsilon chain, mitochondrial (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10035755
[exp]
125 / 6e-39 AT1G51650 112 / 2e-34 ATP synthase epsilon chain, mitochondrial (.1)
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.008G008900
[exp]
108 / 4e-32 AT1G51650 122 / 2e-38 ATP synthase epsilon chain, mitochondrial (.1)
Potri.010G250000
[exp]
108 / 4e-32 AT1G51650 122 / 1e-38 ATP synthase epsilon chain, mitochondrial (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
PF04627 ATP-synt_Eps Mitochondrial ATP synthase epsilon chain
Representative CDS sequence
>Lus10034841 pacid=23142306 polypeptide=Lus10034841 locus=Lus10034841.g ID=Lus10034841.BGIv1.0 annot-version=v1.0
ATGAAAATAAATGGACGTCCTGCTAACTCGGAGCTTTTTGTTGCGGCTAAAAGAAATTCCGACGAACTGAAGAGAGCAAAGAGACGACCGAAGAAAGTAA
GAAAGAAAGAGCTCGGACCAATGGCGTCGACTGCAGCAGTGCCTTTCTGGAGGTCCGCAGGGATGACCTACATAACCTACTCAAACATCTGCGCCAACTT
AGTCAGGAACTCTCTCAAGGAGCCATTCAAGGCTGAAGCCCTAGCTCGGGAGAAGGTCCATTTCTCCGTTGCAAAGTGGGCTGAAGGAAAACCCCAGAAA
CCCAGTAAGATTTCCCTTGCCCATCTGTTTTTTTTTCTTTCTTTCTTCGCTTAG
AA sequence
>Lus10034841 pacid=23142306 polypeptide=Lus10034841 locus=Lus10034841.g ID=Lus10034841.BGIv1.0 annot-version=v1.0
MKINGRPANSELFVAAKRNSDELKRAKRRPKKVRKKELGPMASTAAVPFWRSAGMTYITYSNICANLVRNSLKEPFKAEALAREKVHFSVAKWAEGKPQK
PSKISLAHLFFFLSFFA

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT1G51650 ATP synthase epsilon chain, mi... Lus10034841
[exp]
0 1
AT1G71150 unknown protein Lus10021799
[exp]
1.0 0.8084
AT3G50860 Clathrin adaptor complex small... Lus10041742
[exp]
1.4 0.7953
AT5G40080 Mitochondrial ribosomal protei... Lus10034241
[exp]
4.9 0.7273
AT1G55020 ATLOX1, LOX1 ARABIDOPSIS LIPOXYGENASE 1, li... Lus10001465
[exp]
6.6 0.7662
AT5G16060 Cytochrome c oxidase biogenesi... Lus10033547
[exp]
9.2 0.7843
AT1G67000 Protein kinase superfamily pro... Lus10026761
[exp]
11.5 0.7222
AT4G26590 ATOPT5 ARABIDOPSIS THALIANA OLIGOPEPT... Lus10014885
[exp]
13.4 0.7139
AT5G18910 Protein kinase superfamily pro... Lus10012776
[exp]
15.0 0.6631
AT5G16060 Cytochrome c oxidase biogenesi... Lus10017586
[exp]
15.0 0.7076
AT5G42560 Abscisic acid-responsive (TB2/... Lus10024332
[exp]
16.4 0.6218

Lus10034841 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.