Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G02290 56 / 1e-09 NAK Protein kinase superfamily protein (.1.2) AT1G07870 56 / 3e-09 Protein kinase superfamily protein (.1.2) AT3G02810 53 / 2e-08 Protein kinase superfamily protein (.1) AT5G16500 53 / 3e-08 Protein kinase superfamily protein (.1) AT5G18610 51 / 1e-07 Protein kinase superfamily protein (.1.2) AT5G02800 50 / 2e-07 CDL1 CDG1-like 1, Protein kinase superfamily protein (.1) AT5G56460 50 / 2e-07 Protein kinase superfamily protein (.1) AT1G24030 50 / 2e-07 Protein kinase superfamily protein (.1.2) AT2G17220 50 / 2e-07 Kin3 kinase 3, Protein kinase superfamily protein (.1.2) AT2G02800 49 / 3e-07 Kin2, APK2B protein kinase 2B (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10010703 [exp] 53 / 2e-08 AT1G24030 578 / 0.0 Protein kinase superfamily protein (.1.2) Lus10029187 [exp] 52 / 3e-08 AT1G24030 582 / 0.0 Protein kinase superfamily protein (.1.2) Lus10012814 [exp] 51 / 1e-07 AT5G18610 807 / 0.0 Protein kinase superfamily protein (.1.2) Lus10007041 [exp] 51 / 1e-07 AT1G76370 236 / 1e-73 Protein kinase superfamily protein (.1) Lus10033966 [exp] 51 / 1e-07 AT5G18610 805 / 0.0 Protein kinase superfamily protein (.1.2) Lus10036499 [exp] 50 / 2e-07 AT5G18610 575 / 0.0 Protein kinase superfamily protein (.1.2) Lus10042192 [exp] 50 / 2e-07 AT2G02800 479 / 3e-168 protein kinase 2B (.1.2) Lus10008627 [exp] 50 / 2e-07 AT2G02800 475 / 6e-164 protein kinase 2B (.1.2) Lus10041426 [exp] 50 / 2e-07 AT5G18610 582 / 0.0 Protein kinase superfamily protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G128500 [exp] 51 / 9e-08 AT1G61590 622 / 0.0 Protein kinase superfamily protein (.1) Potri.010G215100 [exp] 51 / 1e-07 AT5G18610 595 / 0.0 Protein kinase superfamily protein (.1.2) Potri.009G026500 [exp] 51 / 1e-07 AT1G07870 595 / 0.0 Protein kinase superfamily protein (.1.2) Potri.001G002300 [exp] 50 / 2e-07 AT5G56460 608 / 0.0 Protein kinase superfamily protein (.1) Potri.006G133300 [exp] 50 / 2e-07 AT5G02800 566 / 0.0 CDG1-like 1, Protein kinase superfamily protein (.1) Potri.008G046500 [exp] 50 / 2e-07 AT5G18610 582 / 0.0 Protein kinase superfamily protein (.1.2) Potri.008G148000 [exp] 50 / 2e-07 AT2G02800 604 / 0.0 protein kinase 2B (.1.2) Potri.008G145900 [exp] 50 / 2e-07 AT1G24030 587 / 0.0 Protein kinase superfamily protein (.1.2) Potri.003G166900 [exp] 50 / 3e-07 AT5G13160 745 / 0.0 avrPphB susceptible 1, Protein kinase superfamily protein (.1) Potri.018G127300 [exp] 50 / 3e-07 AT3G01300 498 / 5e-175 Protein kinase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF07714 [flax] [poplar] PK_Tyr_Ser-Thr Protein tyrosine and serine/threonine kinase
Representative CDS sequence Show only first row Show all	>Lus10034842 pacid=23142239 polypeptide=Lus10034842 locus=Lus10034842.g ID=Lus10034842.BGIv1.0 annot-version=v1.0 ATGGACCATCCAAACATCATTAAGCTTATCGGGTATTGTGCTAAAGGGGATAAAGTTCTAATGATGTTGGAGTACTTGACAAGAGGTTCACTAGAAGATA ACCTCAACAAATTACTAGGTCGAATCACTCGGATATACAAAAAATGCATATGGTCTTGTAGCTTTAGACTCGGTATTGGGCTGGGTCGGAGCCCAAGGAA CCCCATCCCCAACTCCACCTACAGAAGGAAGATATTAGACTCTACAAGGGGACCAATGGGATGGTGCATTGTCATATGGGCAAGACAAATGCTTCATGAT CGTGTGGATCATCAACCTGAACTAGAGATGGTTGATCCACATCTGAATGATCAGTTTCTAGAGATTGACCTACGACAAGCTCTCAAAATATGCGAACAGT GCATAGCGGCTTTATACGAGGTTTTTGGTAAAGATATAGAGTCGATGGTGAATGGCTTCGCTTATCCAGTGTTCAGAGCAGCTATAGGAATGCAGGGCGA GGAAACTCCATCCTTAAAGCATGTACATCCCTAA
AA sequence Show only first row Show all	>Lus10034842 pacid=23142239 polypeptide=Lus10034842 locus=Lus10034842.g ID=Lus10034842.BGIv1.0 annot-version=v1.0 MDHPNIIKLIGYCAKGDKVLMMLEYLTRGSLEDNLNKLLGRITRIYKKCIWSCSFRLGIGLGRSPRNPIPNSTYRRKILDSTRGPMGWCIVIWARQMLHD RVDHQPELEMVDPHLNDQFLEIDLRQALKICEQCIAALYEVFGKDIESMVNGFAYPVFRAAIGMQGEETPSLKHVHP

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G02290		NAK	Protein kinase superfamily pro...		Lus10034842 [exp]	0	1

Compare expression of checked genes

Lus10034842 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.