Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G49830 1049 / 0 EXO84B exocyst complex component 84B (.1.2.3) AT1G10385 813 / 0 Vps51/Vps67 family (components of vesicular transport) protein (.1) AT1G10180 382 / 4e-121 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035756 [exp] 1304 / 0 AT5G49830 1049 / 0.0 exocyst complex component 84B (.1.2.3) Lus10037332 [exp] 1289 / 0 AT5G49830 1052 / 0.0 exocyst complex component 84B (.1.2.3) Lus10033387 [exp] 857 / 0 AT5G49830 588 / 0.0 exocyst complex component 84B (.1.2.3) Lus10017692 [exp] 763 / 0 AT1G10385 905 / 0.0 Vps51/Vps67 family (components of vesicular transport) protein (.1) Lus10033648 [exp] 743 / 0 AT1G10385 891 / 0.0 Vps51/Vps67 family (components of vesicular transport) protein (.1) Lus10018297 [exp] 350 / 3e-109 AT1G10180 858 / 0.0 unknown protein Lus10040609 [exp] 350 / 5e-109 AT1G10180 854 / 0.0 unknown protein Lus10022896 [exp] 240 / 1e-67 AT1G10180 225 / 2e-62 unknown protein Lus10024929 [exp] 181 / 7e-48 AT1G10385 170 / 2e-44 Vps51/Vps67 family (components of vesicular transport) protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G249900 [exp] 1202 / 0 AT5G49830 1072 / 0.0 exocyst complex component 84B (.1.2.3) Potri.008G009100 [exp] 1179 / 0 AT5G49830 1070 / 0.0 exocyst complex component 84B (.1.2.3) Potri.016G063700 [exp] 833 / 0 AT1G10385 899 / 0.0 Vps51/Vps67 family (components of vesicular transport) protein (.1) Potri.012G120000 [exp] 367 / 2e-115 AT1G10180 809 / 0.0 unknown protein Potri.015G118500 [exp] 356 / 3e-111 AT1G10180 788 / 0.0 unknown protein Potri.015G119300 [exp] 308 / 3e-95 AT1G10180 628 / 0.0 unknown protein Potri.014G195400 [exp] 246 / 1e-69 AT1G10180 215 / 8e-59 unknown protein
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0295 [flax] [poplar] Vps51 PF08700 [flax] [poplar] Vps51 Vps51/Vps67
Representative CDS sequence Show only first row Show all	>Lus10034843 pacid=23142315 polypeptide=Lus10034843 locus=Lus10034843.g ID=Lus10034843.BGIv1.0 annot-version=v1.0 ATGGCGTCAGTGAAGACCGCTCGGTCCAGGGCGGCTCCGATGAAGGAAAATGGAGCGGTGAAGACGGAGGAAGGACTCAGCGTTTTCAAGTCCGATAAGT TCGATGCTGATGCTTATGTTCAGTCCAAATGCTCGCTCAATGACAAGGAAATAAGGCAGCTCTGCTCTTATCTTTTGGATTTGAAGAAAGCTTCTGCTGA GGAAATGCGGAAAAGTGTTTATGCCAACTATCCCGCTTTCATACGTACATCAAAAGAGATATCGGATTTGGAAGGGGAACTTTCATCTATCAGAAGCCTG CTTTCTACTCAGGCTACGTTAATTCATAGTTTAGCAGATGGAGTTCATATTGATCAGTTGTCTGAAAAGGTTCCAGAAGATTCTTCTGTAAATAATTTAC TGAATAGTGAGGATAGAGAACCTTCTACATTGGGGAGATGGTCAGTTGAATTTCCTGATCTCCTTGATGTCTTATTAGCTGAGAGGAGGGTGGATGAAGC TCTTACAGCCTTTGAAGAGGGCGAGCACATAGTTTCTGAGGCAAACGAAGCAAAATCATTGAGTCCTTATGTACTCCGGTCATTGGAGACCGCAATTATG CAACGGAAGCAAAAATTAGCTGATCAGCTTGCTGAAGCAGCATGTCAGCCTTCTACCCGAGGTGCTGAACTTCGGGCAGCCATTAGTGCTCTTAAAAGCC TTGGGGATGGTCCACGTGCTCATAATTTGTTACTTAGTGCACACTTTCAAAGGTACCAGTATAACATGCAAAGCCTCCGTCCGTCAAGCACTTCTTATGG AGGAGCATATACTGCTGCACTCTCCCAAATAGTTTTCTCGGCTATTGCTCAAGCTGCTACTGACTCTTTATCTATTTTTGGTCAAGAGCCAGCATATACT TCTGAACTTGTGATGTGGGCTACTAAGCAAACAGAGTCTTTTGCTATTCTTATAAAAAGACATGCTTTAGCATCATCAGCAGCTGCAGGTGGATTACGAG CTGCTGCAGAGTGTGTACAGATAGCTTTGGGTCATTGCTCTTTATTGGAAGCTCGTGGCTTGGCTATTTGCCCTGTGCTTTTGAAACTCTTTAGACCTAG TGTTGAACAAGCAGTGGATGCCAATCTCAAACGGATTGAAGAGAGCACTGCAGCTATGGCTGCTGCTGATGATTGGGTACTAACTCATTCTCCAGCAACC ACTCGGCAGTCTGGAAGGGGTATTGCATCTCTTGGTACTGCCAGTGCTTTCCAACATAAACTCACCAGCAGTGCTCATCGGTTTAACTTAATGGTTCAGG ACTTTTTTGAGGATGTTACACCTCTTTTGAGTATGTTGGGTGGTCAAACACTGACGGGAGTTTTCCAAGTATTTAACTCATATATTAACATGCTTATAAA GGCATTGCCTGGTTCTATGGAAGAAGAAGCCAATTTTGAAGGTTTTGCTAATAAAATAGTCAGAATGGCTGAGACTGAAGAACAGCAGATTGCCTTGCTA GCAAATGCATCATTGTTAGCAGATGAATTGCTGCCTCGTGCAGCAATGAAACTATATCCTCCGATTCATACAAATTATAAGGATGATAGAAGTAGGAGAC ATGTTGATAAACCAAATCGTCATCCTGAACAACGAGAATGGAGGAAACGCCTTGTGACTGCTGTTGACAGGTTGAAAGATACTTTCTGCCGACAGCATGC ACTGGATCTAATTTTTACGGAAGATGGTGATAGTTATCTTTCTGCTGAAATGTACATCAACATGGACAATAGTAACGTAGAGGAAATAGAATGGCTTCCT TCCCCAATATTCCAGGAACTATTCTTAAAACTGAGCAGGATGGCTAGCATAACAGCAGACATGTTTATGGGGAGGGAAAGGTTTGCGACTTTACTGTTGA TGAGACTTACGGAAACAGTAATCTTGTGGCTATCAGAAGATCAGAGCTTCTGGGACGACATTGAGGAAGGACCAAGGCCTCTAGGTCCTATGGGGTTACA ACAGTTCTATCTCGACATGAAGTTCATATTGTGCTTTGCAACTCAAGGACGTTACTTGTCACGAAACTTGCATCGTGTTGTCAGCGAGATCATTAACAAG GGTATGGCAGCATTCTCAGCCACAGGGATGGATCCCGACAGGGTACTCCCGGAAGACGAATGGTTTAACGAGGTATGTCAAGAAGCGATGGAAAGGTTGA TCGGGAAACCGAAAGCCATAGACGGAGAAAGGGAACTCAATAGTCCGACAGCATCTGTATCGGCACAATCTATATCATCTGTTAGATCTCACGGGAGTAG CTGA
AA sequence Show only first row Show all	>Lus10034843 pacid=23142315 polypeptide=Lus10034843 locus=Lus10034843.g ID=Lus10034843.BGIv1.0 annot-version=v1.0 MASVKTARSRAAPMKENGAVKTEEGLSVFKSDKFDADAYVQSKCSLNDKEIRQLCSYLLDLKKASAEEMRKSVYANYPAFIRTSKEISDLEGELSSIRSL LSTQATLIHSLADGVHIDQLSEKVPEDSSVNNLLNSEDREPSTLGRWSVEFPDLLDVLLAERRVDEALTAFEEGEHIVSEANEAKSLSPYVLRSLETAIM QRKQKLADQLAEAACQPSTRGAELRAAISALKSLGDGPRAHNLLLSAHFQRYQYNMQSLRPSSTSYGGAYTAALSQIVFSAIAQAATDSLSIFGQEPAYT SELVMWATKQTESFAILIKRHALASSAAAGGLRAAAECVQIALGHCSLLEARGLAICPVLLKLFRPSVEQAVDANLKRIEESTAAMAAADDWVLTHSPAT TRQSGRGIASLGTASAFQHKLTSSAHRFNLMVQDFFEDVTPLLSMLGGQTLTGVFQVFNSYINMLIKALPGSMEEEANFEGFANKIVRMAETEEQQIALL ANASLLADELLPRAAMKLYPPIHTNYKDDRSRRHVDKPNRHPEQREWRKRLVTAVDRLKDTFCRQHALDLIFTEDGDSYLSAEMYINMDNSNVEEIEWLP SPIFQELFLKLSRMASITADMFMGRERFATLLLMRLTETVILWLSEDQSFWDDIEEGPRPLGPMGLQQFYLDMKFILCFATQGRYLSRNLHRVVSEIINK GMAAFSATGMDPDRVLPEDEWFNEVCQEAMERLIGKPKAIDGERELNSPTASVSAQSISSVRSHGSS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G49830		EXO84B	exocyst complex component 84B ...		Lus10034843 [exp]	0	1
AT5G49830		EXO84B	exocyst complex component 84B ...		Lus10033387 [exp]	1.0	0.8725
AT3G24180			Beta-glucosidase, GBA2 type fa...		Lus10000757 [exp]	3.2	0.8405
AT1G53050			Protein kinase superfamily pro...		Lus10039836 [exp]	3.9	0.8264
AT5G20540		ATBRXL4, BRX-LI...	BREVIS RADIX-like 4 (.1)		Lus10021565 [exp]	7.3	0.7991
AT1G10280			Core-2/I-branching beta-1,6-N-...		Lus10013427 [exp]	7.4	0.8029
AT4G21760		BGLU47	beta-glucosidase 47 (.1)		Lus10032660 [exp]	7.9	0.7900
AT4G21540		SPHK1	sphingosine kinase 1 (.1.2.3)		Lus10018439 [exp]	8.0	0.8188
AT1G02120		VAD1	VASCULAR ASSOCIATED DEATH1, GR...		Lus10028209 [exp]	9.8	0.7807
AT3G06350		EMB3004, MEE32	MATERNAL EFFECT EMBRYO ARREST ...		Lus10001725 [exp]	11.2	0.7802
AT1G53050			Protein kinase superfamily pro...		Lus10031651 [exp]	13.0	0.7782

Compare expression of checked genes

Lus10034843 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.