Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G21215 276 / 6e-92 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) AT2G42240 91 / 8e-21 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2), RNA-binding (RRM/RBD/RNP motifs) family protein (.3) AT3G13700 69 / 3e-13 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10033388 [exp] 336 / 2e-115 AT3G21215 337 / 2e-115 RNA-binding (RRM/RBD/RNP motifs) family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G249700 [exp] 294 / 9e-99 AT3G21215 376 / 9e-131 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Potri.008G009400 [exp] 285 / 3e-95 AT3G21215 219 / 4e-69 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Potri.007G046600 [exp] 92 / 4e-21 AT2G42240 334 / 4e-115 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2), RNA-binding (RRM/RBD/RNP motifs) family protein (.3) Potri.003G035000 [exp] 68 / 6e-13 AT3G13700 348 / 3e-121 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Potri.012G019300 [exp] 44 / 8e-05 AT1G76940 167 / 2e-51 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Potri.015G009000 [exp] 40 / 0.0007 AT1G76940 170 / 8e-53 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0221 [flax] [poplar] RRM PF00076 [flax] [poplar] RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
Representative CDS sequence Show only first row Show all	>Lus10034844 pacid=23142207 polypeptide=Lus10034844 locus=Lus10034844.g ID=Lus10034844.BGIv1.0 annot-version=v1.0 ATGGCCGGAGCTGGAATTCACCCTTACCACCACCAATGGCCGCCGGCTCCTACTCCACCACCGCCCTCCGCCGCTGTCGCCCCTCCTCCTTCCGTTCATC ATCCTCATCCTCCTCCTGCTACGTTGGATAATGCCAACCGCGGCCCTGCGCACGACGAAGTTCGGACGGTTTTTATCACGGGGCTGCCGGAAGATGTGAA GGAGAGGGAACTGCAGAACTTACTGAGGTGGTTGCCGGGTTATGAAGCTTCCCAGGTTAACTTCAAAGGAGAAAAGCCCATGGGTTTTGCTCTATTTTCC ACTCCTCCATTTGCTATTGCTGCCAAGGATGCTCTTCAGGACATGGTTTTTGACGCCGAATTGAAGGCGGTATTACATACTGAAATGGCCAAGAAAAATC TGTTTGTTAAAAGAGGAATAGTAGCAGACACAAGTGCTTTTGATCAAAGTAAGCGATTACGTACTGGTGGTGACTATAGCCATGCTGCTTACCCCTCGCC ACCTCCATTTCACCATCCTCCTCCTCCTACTTGGGGTCACCATGGGTACATGGCTCCACCACCACACCATTATGATCCATATGGAGGCTATCATGTGCCT CACGTACCAATGCCTGCACCTGCTCCTGTACCAGCTCCAAGTAGTTATGTTCCTGTTCAGAATACGAAGGATAATCCTCCTTGCAACACTCTGTTTATTG GGAATCTTGGAGAAAACATCAATGAAGAGGAACTGAGAGGACTATTTAGCGGCCAACCTGGTTTCAAGCAAATGAAAGTCTTGAGGCAAGAAAGGCATAC AGTATGTTTTATCGAGTTCGAATATTCGAAGAATCCATTTGGGAAGAGGAAAGATGGACCTCACCCTGTTGTTGCTTCCCCAAGCTCGAGTGGAGCTCAG TCATCTATGACATACCAGTAG
AA sequence Show only first row Show all	>Lus10034844 pacid=23142207 polypeptide=Lus10034844 locus=Lus10034844.g ID=Lus10034844.BGIv1.0 annot-version=v1.0 MAGAGIHPYHHQWPPAPTPPPPSAAVAPPPSVHHPHPPPATLDNANRGPAHDEVRTVFITGLPEDVKERELQNLLRWLPGYEASQVNFKGEKPMGFALFS TPPFAIAAKDALQDMVFDAELKAVLHTEMAKKNLFVKRGIVADTSAFDQSKRLRTGGDYSHAAYPSPPPFHHPPPPTWGHHGYMAPPPHHYDPYGGYHVP HVPMPAPAPVPAPSSYVPVQNTKDNPPCNTLFIGNLGENINEEELRGLFSGQPGFKQMKVLRQERHTVCFIEFEYSKNPFGKRKDGPHPVVASPSSSGAQ SSMTYQ

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G21215			RNA-binding (RRM/RBD/RNP motif...		Lus10034844 [exp]	0	1
AT5G63260	C3HZnF		Zinc finger C-x8-C-x5-C-x3-H t...		Lus10043330 [exp]	1.4	0.8609
AT5G17210			Protein of unknown function (D...		Lus10007189 [exp]	4.0	0.7931
AT5G24500			unknown protein		Lus10032937 [exp]	4.9	0.7726
AT5G62090		SLK2	SEUSS-like 2 (.1.2)		Lus10038880 [exp]	5.8	0.8343
AT5G62090		SLK2	SEUSS-like 2 (.1.2)		Lus10015002 [exp]	9.0	0.8173
AT2G31600			unknown protein		Lus10025558 [exp]	14.9	0.6835
AT3G50700	C2H2ZnF	ATIDD2	indeterminate(ID)-domain 2 (.1...		Lus10010820 [exp]	22.2	0.7260
AT1G43850		SEU	SEUSS transcriptional co-regul...		Lus10042785 [exp]	27.5	0.7547
AT3G49350			Ypt/Rab-GAP domain of gyp1p su...		Lus10008839 [exp]	31.1	0.7526
AT1G26110		DCP5	decapping 5 (.1.2)		Lus10017884 [exp]	33.2	0.7513

Compare expression of checked genes

Lus10034844 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.