Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G04885 793 / 0 Glycosyl hydrolase family protein (.1) AT5G20950 783 / 0 Glycosyl hydrolase family protein (.1.2) AT5G20940 717 / 0 Glycosyl hydrolase family protein (.1) AT3G47000 579 / 0 Glycosyl hydrolase family protein (.1) AT3G62710 567 / 0 Glycosyl hydrolase family protein (.1) AT3G47010 560 / 0 Glycosyl hydrolase family protein (.1.2) AT3G47050 553 / 0 Glycosyl hydrolase family protein (.1.2) AT3G47040 487 / 1e-165 Glycosyl hydrolase family protein (.1.2) AT5G10560 71 / 1e-12 Glycosyl hydrolase family protein (.1) AT3G19620 69 / 4e-12 Glycosyl hydrolase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10033393 [exp] 1139 / 0 AT5G04885 964 / 0.0 Glycosyl hydrolase family protein (.1) Lus10001151 [exp] 761 / 0 AT5G20950 911 / 0.0 Glycosyl hydrolase family protein (.1.2) Lus10013646 [exp] 757 / 0 AT5G20950 941 / 0.0 Glycosyl hydrolase family protein (.1.2) Lus10005706 [exp] 756 / 0 AT5G04885 863 / 0.0 Glycosyl hydrolase family protein (.1) Lus10013390 [exp] 752 / 0 AT5G20950 935 / 0.0 Glycosyl hydrolase family protein (.1.2) Lus10008432 [exp] 746 / 0 AT5G20950 927 / 0.0 Glycosyl hydrolase family protein (.1.2) Lus10043457 [exp] 715 / 0 AT5G20950 809 / 0.0 Glycosyl hydrolase family protein (.1.2) Lus10008434 [exp] 712 / 0 AT5G04885 796 / 0.0 Glycosyl hydrolase family protein (.1) Lus10013388 [exp] 700 / 0 AT5G04885 801 / 0.0 Glycosyl hydrolase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G013500 [exp] 894 / 0 AT5G04885 966 / 0.0 Glycosyl hydrolase family protein (.1) Potri.009G153900 [exp] 808 / 0 AT5G20950 937 / 0.0 Glycosyl hydrolase family protein (.1.2) Potri.008G013700 [exp] 802 / 0 AT5G20950 901 / 0.0 Glycosyl hydrolase family protein (.1.2) Potri.009G042800 [exp] 603 / 0 AT3G47000 934 / 0.0 Glycosyl hydrolase family protein (.1) Potri.019G037400 [exp] 602 / 0 AT5G20950 926 / 0.0 Glycosyl hydrolase family protein (.1.2) Potri.013G055600 [exp] 593 / 0 AT5G20950 932 / 0.0 Glycosyl hydrolase family protein (.1.2) Potri.005G059200 [exp] 372 / 5e-126 AT5G04885 385 / 8e-131 Glycosyl hydrolase family protein (.1) Potri.009G154032 [exp] 265 / 2e-85 AT5G20940 254 / 7e-82 Glycosyl hydrolase family protein (.1) Potri.009G154701 [exp] 261 / 5e-84 AT5G04885 286 / 6e-94 Glycosyl hydrolase family protein (.1) Potri.009G154802 [exp] 229 / 6e-71 AT5G04885 232 / 5e-72 Glycosyl hydrolase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0058 [flax] [poplar] Glyco_hydro_tim PF00933 [flax] [poplar] Glyco_hydro_3 Glycosyl hydrolase family 3 N terminal domain CL0058 [flax] [poplar] PF01915 [flax] [poplar] Glyco_hydro_3_C Glycosyl hydrolase family 3 C-terminal domain
Representative CDS sequence Show only first row Show all	>Lus10034848 pacid=23142226 polypeptide=Lus10034848 locus=Lus10034848.g ID=Lus10034848.BGIv1.0 annot-version=v1.0 ATGTGTAGGGGTTCAAGGCTTCAGTTGTTTGGGATATTGTGGCTGTGCGCATGGGTAGTTGGGACAGAGGCAGAGACGGCGAAATACAAAGATCCAAAGC AACCACCGACTATTCGAATTAAGGACCTAATGAGTAGAATGTCACTCGCCGAAAAGATTGGCCAGATGACCCAACTCGATAGGGAGTCAGCCACCCCGGA GATTATGCGGACTTACTCCATAGGTAGTGTATTGAGTGGTGGAGGGAGTGCACCGCTTCCTGATGCTACGGCCAAGGATTGGATTGATATGGTAAATACG TTTCAGAAAGGATCTATGTCCAGTCGTTTAGGGATTCCAATGATATATGGTATCGATGCTGTTCATGGACACAACAATGTGTATAATGCCACAATATTCC CTCACAACGTCGGTCTTGGAGCCACCAGGCAAGTGGACCCTGACTTGGTCAAGAGAATTGGTGCTGCAACTGCTCTTGAAGCTAGAGCCACAGGGATTCC TTACGTCTTTGCACCATGCATAGCGGTCTGTAGAGACCCAAGGTGGGGACGGTGTTATGAGAGCTATAGTGAGGATCCCAAGGTTGTGGAAGCAATGACA GAGATCATACCTGGTTTACAAGGAGACATGCCTGCTCATTCTCGAAGAGGAGTTCCGTATGCCATTGGAAAGGATAAAGTAGCAGCTTGCGCTAAACATT TTGTGGGTGATGGTGGAACAACCAAGGGCCTCAATGAGAATAATACGGGGTTTGTTATCTCCGATTGGCAAGGTATTGATAGGATCACCCCAACGGCACA TGAAAACTATACTTATTCGGTGCAAGAGGGGGTTCTAGCTGGCATTGACATGGTCATGCTTCCATACAACCATACTGAGTTCATTGATGACCTTACTCTC CTGGTAAAGAACAATGTCATCCCAATGGATCGCATTGATGATGCTGTACGAAGGATTCTGCTGGTGAAGTTCAATTTGGGTCTCTTTGAGAACCCTATGG CTGATCTAAGCTTTGTTAATGAACTTGGAAGCCAGGCACACAGAGCCTTGGCTCGCGAGGCAGTGAGAAAATCAGCTGTGCTGTTGAAGAACGGGAAGAA TGGGACTGGTCCACTATTACCTCTTCCCAAAAAGGCCTCAAGAATTCTGGTTGCTGGTACACACGCTGATAATTTGGGTTATCAATGTGGTGGATGGACT ATCAACTGGCAGGGATTTAGCGGGAACAATGATACTTCAGGAACCACCATCCTTACTGCCATACGGTCCACGGTTGATCCAAAAACAGAGGTTGTCTTCC AAGAGGATCCCAACATCCAATTCTTGGAGGGGAACAAATTTGACTATGCGATTGTGGTTGTTGGTGAGCCACCTTATGCAGAGACTGCAGGGGATAGCAG CGATCTCACAATGAAAGACCCCGGTCCAAATACCATCAACAATGTGTGCGGGGCTGTCAAGTGTGCAGTTGTGGTAGTATCAGGGAGACCCATTGTGATT GAGCCATACATTGGTTCAATGGATGCGCTTGTGGCAGCTTGGTTACCAGGCAGCGAAGGGCAAGGAGTGGCAGATGTCCTGTTTGGTGACTTTGGATTTA CTGGGAGACTTGCCAGAACATGGTTTAAGAGTGTGGCTCAACTTCCTATGAACCTTGGAGATGCACATTACGATCCTCTCTTCCCCTTTGACTTTGGAAT CAAGACTGCTAGTTTTAATGGCTCCATTGAAAGGTCAACATCAGATGGTGGAGCTACAAGGCCATGCGTAGCTGTTCTTCTCATTTCTGCAATACTAACT AGCTTAATATCTTCTTACAAATGA
AA sequence Show only first row Show all	>Lus10034848 pacid=23142226 polypeptide=Lus10034848 locus=Lus10034848.g ID=Lus10034848.BGIv1.0 annot-version=v1.0 MCRGSRLQLFGILWLCAWVVGTEAETAKYKDPKQPPTIRIKDLMSRMSLAEKIGQMTQLDRESATPEIMRTYSIGSVLSGGGSAPLPDATAKDWIDMVNT FQKGSMSSRLGIPMIYGIDAVHGHNNVYNATIFPHNVGLGATRQVDPDLVKRIGAATALEARATGIPYVFAPCIAVCRDPRWGRCYESYSEDPKVVEAMT EIIPGLQGDMPAHSRRGVPYAIGKDKVAACAKHFVGDGGTTKGLNENNTGFVISDWQGIDRITPTAHENYTYSVQEGVLAGIDMVMLPYNHTEFIDDLTL LVKNNVIPMDRIDDAVRRILLVKFNLGLFENPMADLSFVNELGSQAHRALAREAVRKSAVLLKNGKNGTGPLLPLPKKASRILVAGTHADNLGYQCGGWT INWQGFSGNNDTSGTTILTAIRSTVDPKTEVVFQEDPNIQFLEGNKFDYAIVVVGEPPYAETAGDSSDLTMKDPGPNTINNVCGAVKCAVVVVSGRPIVI EPYIGSMDALVAAWLPGSEGQGVADVLFGDFGFTGRLARTWFKSVAQLPMNLGDAHYDPLFPFDFGIKTASFNGSIERSTSDGGATRPCVAVLLISAILT SLISSYK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G20950			Glycosyl hydrolase family prot...		Lus10034848 [exp]	0	1
AT1G65380		AtRLP10, CLV2	clavata 2, Receptor Like Prote...		Lus10020189 [exp]	4.5	0.9101
AT5G04885			Glycosyl hydrolase family prot...		Lus10033393 [exp]	7.7	0.9181
AT3G63430			unknown protein		Lus10014716 [exp]	10.2	0.8882
AT5G20420		CHR42	chromatin remodeling 42 (.1)		Lus10040956 [exp]	13.0	0.8907
AT2G19090			Protein of unknown function (D...		Lus10020008 [exp]	14.8	0.8716
AT1G65380		AtRLP10, CLV2	clavata 2, Receptor Like Prote...		Lus10026993 [exp]	16.4	0.8803
AT4G03390		SRF3	STRUBBELIG-receptor family 3 (...		Lus10011223 [exp]	16.6	0.8808
AT5G37020	ARF	ARF8, ATARF8	auxin response factor 8 (.1.2)		Lus10010969 [exp]	16.9	0.8815
AT5G64420			DNA polymerase V family (.1)		Lus10041274 [exp]	17.4	0.8960
AT5G19420			Regulator of chromosome conden...		Lus10039525 [exp]	17.7	0.8884

Compare expression of checked genes

Lus10034848 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.