Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G16880 350 / 6e-122 ACR11 ACT domain repeats 11, uridylyltransferase-related (.1.2) AT5G04740 284 / 8e-96 ACR12 ACT domain repeats 12, ACT domain-containing protein (.1.2) AT1G69040 55 / 2e-08 ACR4 ACT domain repeat 4 (.1.2) AT3G01990 53 / 8e-08 ACR6 ACT domain repeat 6 (.1) AT2G03730 50 / 1e-06 ACR5 ACT domain repeat 5 (.1.2) AT5G65890 47 / 1e-05 ACR1 ACT domain repeat 1 (.1.2) AT1G76990 46 / 2e-05 ACR3 ACT domain repeat 3 (.1.2.3.4.5)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10033394 [exp] 542 / 0 AT1G16880 357 / 9e-125 ACT domain repeats 11, uridylyltransferase-related (.1.2) Lus10033395 [exp] 370 / 9e-130 AT1G16880 375 / 1e-131 ACT domain repeats 11, uridylyltransferase-related (.1.2) Lus10034852 [exp] 356 / 4e-124 AT1G16880 372 / 1e-130 ACT domain repeats 11, uridylyltransferase-related (.1.2) Lus10041543 [exp] 50 / 1e-06 AT3G01990 605 / 0.0 ACT domain repeat 6 (.1) Lus10012550 [exp] 48 / 5e-06 AT3G01990 612 / 0.0 ACT domain repeat 6 (.1) Lus10036827 [exp] 45 / 6e-05 AT1G69040 702 / 0.0 ACT domain repeat 4 (.1.2) Lus10011715 [exp] 44 / 9e-05 AT5G65890 520 / 0.0 ACT domain repeat 1 (.1.2) Lus10006662 [exp] 43 / 0.0002 AT4G22780 483 / 4e-170 ACT domain repeat 7 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G248700 [exp] 367 / 1e-128 AT1G16880 363 / 4e-127 ACT domain repeats 11, uridylyltransferase-related (.1.2) Potri.008G010400 [exp] 362 / 1e-126 AT1G16880 359 / 1e-125 ACT domain repeats 11, uridylyltransferase-related (.1.2) Potri.010G238300 [exp] 280 / 5e-94 AT5G04740 392 / 6e-138 ACT domain repeats 12, ACT domain-containing protein (.1.2) Potri.008G020700 [exp] 280 / 6e-94 AT5G04740 370 / 1e-129 ACT domain repeats 12, ACT domain-containing protein (.1.2) Potri.012G083000 [exp] 60 / 5e-10 AT1G69040 493 / 3e-173 ACT domain repeat 4 (.1.2) Potri.012G102200 [exp] 60 / 5e-10 AT1G69040 473 / 5e-165 ACT domain repeat 4 (.1.2) Potri.015G100300 [exp] 60 / 7e-10 AT1G69040 483 / 3e-169 ACT domain repeat 4 (.1.2) Potri.001G327000 [exp] 54 / 6e-08 AT3G01990 630 / 0.0 ACT domain repeat 6 (.1) Potri.010G138600 [exp] 52 / 2e-07 AT1G69040 743 / 0.0 ACT domain repeat 4 (.1.2) Potri.003G167800 [exp] 51 / 5e-07 AT1G69040 486 / 1e-170 ACT domain repeat 4 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0070 [flax] [poplar] ACT PF01842 [flax] [poplar] ACT ACT domain
Representative CDS sequence Show only first row Show all	>Lus10034851 pacid=23142297 polypeptide=Lus10034851 locus=Lus10034851.g ID=Lus10034851.BGIv1.0 annot-version=v1.0 ATGGCTGCCTCGTCATTTACCGCAACCTCCAACGCCTTCCGCCGTCCCTTTCCTACGATCACCAACGCCACTGTGGTCGGGGGAGCTTTTTCCTCTTCTT CCTTCATCACCTTTGGCGTCACTCGATCTTCTTATCTTCCATCTCCCACTGTATTGTCTTGTTCTAGGAGCATAATTGTTCCCCGAGCATCACAATCCAC TGCTGTGGAGGATGGGAGTTACTATGACATGGATGCAGTCCCGACTCCCAAGGTGATCATCGACCTGGATTCTGACCCGGATGCAACTGTTGTGGAGATC ACCTTTGGTGATCGTCTCGGAGCACTTGTGGATACTATGACGGCTCTCAAAAACCTTGGACTTAATGTGGTGAAGGGTAACGTCTTTTTTGATTCTTCAG GCAAGCATAACAGATTTTCCATCACTAAAGCTGCCAGCGGTAGAAAGGTTGAAGACCCAGAACTCCTTGAGGCAATTCGCTTGACAATAATTAACAATCT ACTCAAGTATCACCCTGAATCGAGTAGTAAGTTAGCCATGGGAGTCTTCTTTGGTTCACAGCCACCAAACCAGAAGGTAGATGTGGACATTGCAACCCAT ATAACCATCTCTGATGAAAGTCCTAAGCAGAGCTTACTGAACGTGGAGACAGCTGATCGTCCTGGTTTACTCGTGGACTTGGTGAAGATCATCAGCGACA CAAATATTAATGTTGAATCAGGAGAGTTTGACACCGAGGGATTGTTGGCTAAATCAAAGTTTCATATCAGCTACGGTGGTAGAGCTGTTCCCAAGCCTCG CCAGCAGGTTCTTGCGAACAGCTTGCAGTATTTCTTGAGGCGGCCATCAACAGAGGATTCCAGCTTTTAA
AA sequence Show only first row Show all	>Lus10034851 pacid=23142297 polypeptide=Lus10034851 locus=Lus10034851.g ID=Lus10034851.BGIv1.0 annot-version=v1.0 MAASSFTATSNAFRRPFPTITNATVVGGAFSSSSFITFGVTRSSYLPSPTVLSCSRSIIVPRASQSTAVEDGSYYDMDAVPTPKVIIDLDSDPDATVVEI TFGDRLGALVDTMTALKNLGLNVVKGNVFFDSSGKHNRFSITKAASGRKVEDPELLEAIRLTIINNLLKYHPESSSKLAMGVFFGSQPPNQKVDVDIATH ITISDESPKQSLLNVETADRPGLLVDLVKIISDTNINVESGEFDTEGLLAKSKFHISYGGRAVPKPRQQVLANSLQYFLRRPSTEDSSF

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G16880		ACR11	ACT domain repeats 11, uridyly...		Lus10034851 [exp]	0	1
AT3G45620			Transducin/WD40 repeat-like su...		Lus10033290 [exp]	10.0	0.7743
AT4G08790			Nitrilase/cyanide hydratase an...		Lus10001975 [exp]	17.2	0.7150
AT4G34630			unknown protein		Lus10028793 [exp]	22.0	0.7070
AT4G04860		DER2.2	DERLIN-2.2 (.1)		Lus10006771 [exp]	24.7	0.7137
AT3G02040		AtGDPD1, SRG3	Glycerophosphodiester phosphod...		Lus10012556 [exp]	29.2	0.6912
AT1G13930			unknown protein		Lus10036965 [exp]	38.2	0.6857
AT3G12800		SDRB, DECR	short-chain dehydrogenase-redu...		Lus10031170 [exp]	40.8	0.7036
AT4G35360			Uncharacterised conserved prot...		Lus10013846 [exp]	42.0	0.6913
AT5G64210		AOX2	alternative oxidase 2 (.1)		Lus10005372 [exp]	42.0	0.7008
AT5G53140			Protein phosphatase 2C family ...		Lus10019012 [exp]	43.5	0.6973

Compare expression of checked genes

Lus10034851 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.